Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0127 ATGTTATTGTGTATCTATGTGGATAAAGCCTGGAATTTTGCACAAGGTTTTTGGGACTCTCTTTTCGCTCTGAGATCGGTTCCACTCAACTTACAAAAGAATTGGTTGCAGTCTTTTTTTCAGACTGCACCTTCAAATATTTATCGTCTTTTGAATTATATCATGGCCAGTGATTCTGCTGTAATGTCCAATGGCAATGTCAACTCACATCCTAATCCACAGAGGAATTACCAAGTGGTTGTAGCTGCAACCCGGGATATGGGTATTGGTAAGGATGGAAAACTACCCTGGAGACTGCCCGCTGATCTCAAATTTTTTAAGGAGGTCACTTCAATGACATCTGATCCTGGGAGGAAGAATGCGGTGATAATGGGTAGAAAAACATGGGAGAGTATCCCTCTTGAGAATCGCCCTCTTCCTGGTCGCCTTAATGTTGTTCTTACTCGCTCAGGAAGCTTTGACATTGCAACTGCAGAGAATGTTGTTATATGTGGAAGCATGTCCTCCGCACTGGAATTGTTAGCTGCTTCCCCTTATTGTCTATCAATTGAGAAAGTATTTGTTATAGGAGGCGGTCAGATATTTAGAGAGGCTCTAAATGCACCTGCATGTGAAGCTATCCACATTACTGAAATCGAGACAAATATCGACTGTGATACTTTTATGCCTCCAATTGATTCCTTTGTATTTCAGCCATGGTACTCTTCCTTTCCTAGGGCGGAGAACAACATCCGCTATTGTTTTACCACATACGTACGCGTAAGGAGTTCTGCAGAAGAATCCCTGAGTCAGAATTCTGATCAAATTTGTGACACCAGATCAGATTCCTCAAAATTTGAGGTCAAGAACTTCTCTTTCCTTCCTAAAATGATTTTTGAGAGACATGAGGAGAACATTTATCTCAATCTGGTCCAAGATATCATCTCTGAAGGCACTGCTAAGGATGACAGGACTGGGACTGGCACCTTCTCAAAATTTGGTTGCCAGATGAGGTTTAATTTGCGCAGAAGCTTTCCTCTTTTAACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTCATAAGTGGTTCGACAAATGCCAAGGTGCTGCAGGAAAAAGGCATCAATATATGGGATGGCAACGCATCCAGAGAATACCTTGATAGTGTTGGACTGGCAGAGAGGGAGGAAGGTGACCTGGGACCTGTTTATGGTTTTCAGTGGAGGCATTTTGGTGCCAAGTATACTGACATGCATGCTGACTACTCTGGCAAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGGCGGATTATTCTCTCAGCTTGGAATCCGGTAGATCTTAAATTGATGGCCCTTCCACCCTGCCACATGTTTGCACAGTTCTATGTAGCAAACAGGGAGTTATGTTGTCAAATGTATCAGCGATCCGCAGATATGGGCCTGGGTGTGCCCTTCAATATTGCATCTTATGCTCTCCTCACATGCATGATTGCTCATGTTTGTGAGCTTGTTCCCGGTGATTTTGTCCATGTTATCGGGGATGCGCATGTTTATCGCAACCACGTGAGACCTTTGCAGGAGCAGCTCCGGAACCTTCCTAAACCTTTTCCGATTTTGAAGATAAACCCAAAGAAGGATATAGATTCATTTGTGGCATCTGATTTCAAACTCATAGGCTATGATCCATACCAGAAGATAGAAATGAAGATGGCTGTGTAA 1740 0.4264 MLLCIYVDKAWNFAQGFWDSLFALRSVPLNLQKNWLQSFFQTAPSNIYRLLNYIMASDSAVMSNGNVNSHPNPQRNYQVVVAATRDMGIGKDGKLPWRLPADLKFFKEVTSMTSDPGRKNAVIMGRKTWESIPLENRPLPGRLNVVLTRSGSFDIATAENVVICGSMSSALELLAASPYCLSIEKVFVIGGGQIFREALNAPACEAIHITEIETNIDCDTFMPPIDSFVFQPWYSSFPRAENNIRYCFTTYVRVRSSAEESLSQNSDQICDTRSDSSKFEVKNFSFLPKMIFERHEENIYLNLVQDIISEGTAKDDRTGTGTFSKFGCQMRFNLRRSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGINIWDGNASREYLDSVGLAEREEGDLGPVYGFQWRHFGAKYTDMHADYSGKGFDQLLDVINKIKHNPDDRRIILSAWNPVDLKLMALPPCHMFAQFYVANRELCCQMYQRSADMGLGVPFNIASYALLTCMIAHVCELVPGDFVHVIGDAHVYRNHVRPLQEQLRNLPKPFPILKINPKKDIDSFVASDFKLIGYDPYQKIEMKMAV 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0127 579 TIGRFAM thym_sym: thymidylate synthase 393 579 IPR000398 GO:0004799|GO:0006231
Lele48g0127 579 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 277 579 IPR036926 -
Lele48g0127 579 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 59 254 - -
Lele48g0127 579 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 88 110 IPR017925 GO:0004146
Lele48g0127 579 FunFam Possible thymidylate synthase 291 579 - -
Lele48g0127 579 PRINTS Thymidylate synthase family signature 338 359 IPR000398 GO:0004799|GO:0006231
Lele48g0127 579 PRINTS Thymidylate synthase family signature 457 472 IPR000398 GO:0004799|GO:0006231
Lele48g0127 579 PRINTS Thymidylate synthase family signature 475 501 IPR000398 GO:0004799|GO:0006231
Lele48g0127 579 PRINTS Thymidylate synthase family signature 431 450 IPR000398 GO:0004799|GO:0006231
Lele48g0127 579 PRINTS Thymidylate synthase family signature 513 530 IPR000398 GO:0004799|GO:0006231
Lele48g0127 579 Pfam Thymidylate synthase 299 579 IPR023451 -
Lele48g0127 579 CDD DHFR 80 252 IPR001796 GO:0004146|GO:0046654
Lele48g0127 579 Pfam Dihydrofolate reductase 78 253 IPR001796 GO:0004146|GO:0046654
Lele48g0127 579 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 286 579 IPR036926 -
Lele48g0127 579 SUPERFAMILY Dihydrofolate reductase-like 70 253 IPR024072 -
Lele48g0127 579 Gene3D Dihydrofolate Reductase, subunit A 58 255 IPR024072 -
Lele48g0127 579 PANTHER THYMIDYLATE SYNTHASE 1 100 579 IPR045097 GO:0016741
Lele48g0127 579 PIRSF DHFR-TS 59 579 IPR012262 GO:0004146|GO:0004799|GO:0006730
Lele48g0127 579 Hamap Thymidylate synthase [thyA]. 297 579 IPR000398 GO:0004799|GO:0006231
Lele48g0127 579 ProSitePatterns Thymidylate synthase active site. 442 470 IPR020940 GO:0004799|GO:0006231
Lele48g0127 579 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 76 253 IPR001796 GO:0004146|GO:0046654
Lele48g0127 579 CDD TS_Pyrimidine_HMase 299 533 IPR023451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0127 Lele-ChrLele48 1623343 1629498 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1285 45 22695065 22703683 Lele48g0127 48 1623343 1629498 hybridization
Lele46g1383 46 20719007 20722166 Lele48g0127 48 1623343 1629498 hybridization