Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1285 ATGCTAAATTTACTCGGGTGGGGCCCTCATTTGCGTTTACTCGTATTAAAGTCACAAGGTTTTTGGGTCAGAGTCCCTGCTACCTTCTGCGTTTCTCTCAGATCGGTTCCACTCAACTTACAGAAGAATTGGTTGCAGTCTATTTTTCAGACTGCACCTTTAAATATTTCTCATCTTTTGAATTATATCATGGCCAGTGATTCTGTGGTGATGTCCAACGGCAATGTCAACTCACATACTAATCCACAGAGGAATTATCAAGTTTTTGTAGCTGCAACCCGGGATATGGGCATTGGTAAGGATGGAAAACTACCCTGGAGACTGCCTGCTGATCTCAAACTTTTTAAGGAGGTCACTTTGATGACATCTGATCCCGGGAAGAAGAATGCGGTGATAATGGGTAGAAAAACGTGGGAGAGTATTCCTCTTGAGAATCGCCCTCTTCCTGGTCGCCTTAATGTTGTTCTTACTCGCTCAGGAAGCTTTGACATTGCAACTGCAGAGAATGTTGTTATATGTGGAAGCATGTCGTCCGCATTGGAATTGTTAGCTGCTTCTCCTTACTGCCTATCAATTGAGAAAGTATTTGTTATAGGAGGTGGCCAGATATTTAGAGAGGCTCTAAATGCCCCTGCATGTGAAGCTATCCACATTACTGAAATCGAGACAAATATCGACTGTGATATTTTCATGCCTCCAGTTGATTCCTTTGTATTTCAGCCATGGAACTCTTCCTTTCCTAGGGTGGAAAATAACATCCGCTATTGTTTTACCACATATGTACGAGTAAGGAGTTCTATATCAGAATCCCCGAGTCAGAATTCTGATCAAAACTGTGATACTAGAACAGATTCCTCGAAACTTGAGGTCAAGAACTTCTCTTTCCTCCCTAAAATGATTTTTGAGAGACATGAGGAGAACATTTATCTCAATCTGGTCCAAGATATCATCTCTAAAGGCACTGCTAAGGATGATAGGACCGGGACTGGCACCTTCTCGAAATTTGGTTGCCAGATGAGGTTTAATTTGCGCAGAAGCTTTCCTCTTTTAACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATAAGTGGTTCAACAAATGCCAAGGTGCTGCAGGAAAAAGGCATCCATATATGGGATGGCAATGCATCCAGAGAATACCTTGATAGTGTTGGATTGGCAGAGAGGGAGGAGGGTGACTTGGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCCAAGTACACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAGTCCTGATGATCGGCGGATTATTCTCTCAGCTTGGAATCCGGTAGATCTTGAATTAATGGCCCTTCCACCCTGCCACATGTTTGCACAGTTCTATGTAGCAAACGGGGAGTTATCTTGTCAAATGTATCAGCGATCCGCAGACTTGGGCCTGGGTGTGCCCTTTAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCATGTTTGTGAGCTTGTTCCTGGTGATTTTGTCCATGTTATTGGGGATGCGCATGTTTACCGCAATCACGCGAGACCTTTGCAGGAGCAGCTCCAGAACCTTCCTAAACCTTTTCCGATTTTGAAGATAAATCCAAAGAAGGATATAGATTCATTTGTGGCATCTGATTTCAAACTCATAGGCTATGATCCATGCCAGAAGATAGAAATGAAGATGGCTGTGTAA 1767 0.429 MLNLLGWGPHLRLLVLKSQGFWVRVPATFCVSLRSVPLNLQKNWLQSIFQTAPLNISHLLNYIMASDSVVMSNGNVNSHTNPQRNYQVFVAATRDMGIGKDGKLPWRLPADLKLFKEVTLMTSDPGKKNAVIMGRKTWESIPLENRPLPGRLNVVLTRSGSFDIATAENVVICGSMSSALELLAASPYCLSIEKVFVIGGGQIFREALNAPACEAIHITEIETNIDCDIFMPPVDSFVFQPWNSSFPRVENNIRYCFTTYVRVRSSISESPSQNSDQNCDTRTDSSKLEVKNFSFLPKMIFERHEENIYLNLVQDIISKGTAKDDRTGTGTFSKFGCQMRFNLRRSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDSVGLAEREEGDLGPVYGFQWRHFGAKYTDMHADYSGQGFDQLLDVINKIKHSPDDRRIILSAWNPVDLELMALPPCHMFAQFYVANGELSCQMYQRSADLGLGVPFNIASYALLTCMIAHVCELVPGDFVHVIGDAHVYRNHARPLQEQLQNLPKPFPILKINPKKDIDSFVASDFKLIGYDPCQKIEMKMAV 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1285 588 Pfam Dihydrofolate reductase 89 262 IPR001796 GO:0004146|GO:0046654
Lele45g1285 588 FunFam Possible thymidylate synthase 300 588 - -
Lele45g1285 588 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 264 588 IPR036926 -
Lele45g1285 588 TIGRFAM thym_sym: thymidylate synthase 402 588 IPR000398 GO:0004799|GO:0006231
Lele45g1285 588 Gene3D Dihydrofolate Reductase, subunit A 66 264 IPR024072 -
Lele45g1285 588 Pfam Thymidylate synthase 308 588 IPR023451 -
Lele45g1285 588 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 97 119 IPR017925 GO:0004146
Lele45g1285 588 PANTHER THYMIDYLATE SYNTHASE 1 109 588 IPR045097 GO:0016741
Lele45g1285 588 CDD TS_Pyrimidine_HMase 308 537 IPR023451 -
Lele45g1285 588 PIRSF DHFR-TS 68 588 IPR012262 GO:0004146|GO:0004799|GO:0006730
Lele45g1285 588 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 295 588 IPR036926 -
Lele45g1285 588 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 85 262 IPR001796 GO:0004146|GO:0046654
Lele45g1285 588 CDD DHFR 90 261 IPR001796 GO:0004146|GO:0046654
Lele45g1285 588 PRINTS Thymidylate synthase family signature 347 368 IPR000398 GO:0004799|GO:0006231
Lele45g1285 588 PRINTS Thymidylate synthase family signature 440 459 IPR000398 GO:0004799|GO:0006231
Lele45g1285 588 PRINTS Thymidylate synthase family signature 522 539 IPR000398 GO:0004799|GO:0006231
Lele45g1285 588 PRINTS Thymidylate synthase family signature 484 510 IPR000398 GO:0004799|GO:0006231
Lele45g1285 588 PRINTS Thymidylate synthase family signature 466 481 IPR000398 GO:0004799|GO:0006231
Lele45g1285 588 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 68 263 - -
Lele45g1285 588 SUPERFAMILY Dihydrofolate reductase-like 77 262 IPR024072 -
Lele45g1285 588 ProSitePatterns Thymidylate synthase active site. 451 479 IPR020940 GO:0004799|GO:0006231
Lele45g1285 588 Hamap Thymidylate synthase [thyA]. 306 588 IPR000398 GO:0004799|GO:0006231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1285 Lele-ChrLele45 22695065 22703683 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1285 45 22695065 22703683 Lele47g0122 47 904099 907366 hybridization
Lele45g1285 45 22695065 22703683 Lele48g0127 48 1623343 1629498 hybridization