Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1383 ATGAATCTATTTCTTTGTTGGTATCAGGTTCCACTCAACTTACAAAAGAATTGGTTGCAGTCTTTTTTTCAGACTGCACCTTCAAATATTTATCGTCTTTTGAATCATATCATGGCCAGTGATTCTGCTGTAATGTCCAATGGCAATGTCAACTCACATCCTAATCCACAGAGGAATTACCAAGTGGTTGTAGCTGCAACCCGGGATATGGGTATTGGTAAGGATGGAAAACTACCCTGGAGACTGCCCGCTGATCTCAAATTTTTTAAGGAGGTCACTTCAATGACATCTGATCCTGGGAAGAAGAATGCGGTGATAATGGGTAGAAAAACATGGGAGAGTATCCCTCTTGAGAATCGCCCTCTTCCTGGTCGCCTTAATGTTGTTCTTACTCGCTCAGGAAGCTTTGACATTGCAACTGCAGAGAATGTTGTTATATGTGGAAGCATGTCCTCCGCACTGGAATTGTTAGCTGCTTCCCCTTATTGTCTATCAATTGAGAAAGTATTTGTTATAGGAGGTGGTCAGATATTTAGAGAGGCTCTAAATGCACCTGCATGTGAAGCTATCCACATTACTGAAATCGAGACAAATATCGACTGTGATACTTTCATGCCTCCAATTGATTCCTTTGTATTTCAGCCCTGGTACTCTTCCTTTCCTAGGGTGGAGAACAACATCCGCTATTGTTTTACCACATATGTACGCGTAAGGAGTTCTGCAGAAGAATACCTGAGTCAGAATTCTGATCAAATTTGTGATACCAGATCAGATTCCTCAAAATTTGAGGTCAAGAACTTCTCTTTCCTTCCTAAAATGATTTTTGAGAAACATGAGGAAAACATTTATCTCAATCTGGTTCAAGATATCATCTTTGAAGGCACTGCTAAGGATGATAGGACTGGGACTGGCACCTTCTCGAAATTTGGTTGCCAGATGAGGTTTAATTTGCGCAGAAGCTTTCCTCTTTTAACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTCATAAGTGGTTCGACAAATGCCAAGGTGCTGCAGGAAAAAGGCATCCATATATGGGATGGCAACGCATCCAGAGAATACCTTGATAGTGTTGGACTGGCAGAGAGGGAGGAAGGTGACCTGGGACCTGTTTATGGTTTTCAGTGGAGGCATTTTGGTGCCAAGTATACTGACATGCATGCTGACTATTCTGGCAAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGGCGGATTATTCTCTCAGCTTGGAATCCGGTAGATCTTAAATTGATGGCCCTTCCACCCTGCCACATGTTTGCACAGTTCTATGTAGCAAACGGGGAGTTATCTTGTCAAATGTATCAGCGATCCGCAGACATGGGCCTGGGTGTGCCCTTCAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCATGTTTGTGAGCTTGTTCCTGGTGATTTTGTCCATGTTATCGGGGATGCGCATGTTTATCGCAACCACGTGAGACCTTTGCAGGAGCAGCTCCGGAACCTTCCTAAACCTTTTCCGATTTTGAAGATAAACCCAAAGGATATAGATTCATTTGTGGCATCTGATTTCAAACTCATAGGCTATGATCCATACCAGAAGATAGAAATGAAGATGGCTGTGTAA 1686 0.4223 MNLFLCWYQVPLNLQKNWLQSFFQTAPSNIYRLLNHIMASDSAVMSNGNVNSHPNPQRNYQVVVAATRDMGIGKDGKLPWRLPADLKFFKEVTSMTSDPGKKNAVIMGRKTWESIPLENRPLPGRLNVVLTRSGSFDIATAENVVICGSMSSALELLAASPYCLSIEKVFVIGGGQIFREALNAPACEAIHITEIETNIDCDTFMPPIDSFVFQPWYSSFPRVENNIRYCFTTYVRVRSSAEEYLSQNSDQICDTRSDSSKFEVKNFSFLPKMIFEKHEENIYLNLVQDIIFEGTAKDDRTGTGTFSKFGCQMRFNLRRSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDSVGLAEREEGDLGPVYGFQWRHFGAKYTDMHADYSGKGFDQLLDVINKIKHNPDDRRIILSAWNPVDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCELVPGDFVHVIGDAHVYRNHVRPLQEQLRNLPKPFPILKINPKDIDSFVASDFKLIGYDPYQKIEMKMAV 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1383 561 PRINTS Thymidylate synthase family signature 458 484 IPR000398 GO:0004799|GO:0006231
Lele46g1383 561 PRINTS Thymidylate synthase family signature 496 513 IPR000398 GO:0004799|GO:0006231
Lele46g1383 561 PRINTS Thymidylate synthase family signature 440 455 IPR000398 GO:0004799|GO:0006231
Lele46g1383 561 PRINTS Thymidylate synthase family signature 321 342 IPR000398 GO:0004799|GO:0006231
Lele46g1383 561 PRINTS Thymidylate synthase family signature 414 433 IPR000398 GO:0004799|GO:0006231
Lele46g1383 561 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 71 93 IPR017925 GO:0004146
Lele46g1383 561 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 256 561 IPR036926 -
Lele46g1383 561 PANTHER THYMIDYLATE SYNTHASE 1 83 561 IPR045097 GO:0016741
Lele46g1383 561 CDD TS_Pyrimidine_HMase 282 516 IPR023451 -
Lele46g1383 561 FunFam Possible thymidylate synthase 274 561 - -
Lele46g1383 561 Hamap Thymidylate synthase [thyA]. 280 561 IPR000398 GO:0004799|GO:0006231
Lele46g1383 561 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 59 236 IPR001796 GO:0004146|GO:0046654
Lele46g1383 561 Pfam Thymidylate synthase 282 561 IPR023451 -
Lele46g1383 561 ProSitePatterns Thymidylate synthase active site. 425 453 IPR020940 GO:0004799|GO:0006231
Lele46g1383 561 TIGRFAM thym_sym: thymidylate synthase 376 561 IPR000398 GO:0004799|GO:0006231
Lele46g1383 561 PIRSF DHFR-TS 42 561 IPR012262 GO:0004146|GO:0004799|GO:0006730
Lele46g1383 561 SUPERFAMILY Dihydrofolate reductase-like 54 236 IPR024072 -
Lele46g1383 561 Pfam Dihydrofolate reductase 61 236 IPR001796 GO:0004146|GO:0046654
Lele46g1383 561 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 268 561 IPR036926 -
Lele46g1383 561 Gene3D Dihydrofolate Reductase, subunit A 41 238 IPR024072 -
Lele46g1383 561 CDD DHFR 63 235 IPR001796 GO:0004146|GO:0046654
Lele46g1383 561 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 42 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1383 Lele-ChrLele46 20719007 20722166 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g1383 46 20719007 20722166 Lele47g0122 47 904099 907366 hybridization
Lele46g1383 46 20719007 20722166 Lele48g0127 48 1623343 1629498 hybridization