LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele48g0105	ATGGCGAGCTTATTGGGTACGATTCTGAAGCACCCAGAAGAAATATACCCGATGCTCAAGCTGAAGATGGTGATAAGGAAAGCAGAGAAGGTGATTCCTGATCAGAAACCACATTGGGTTTTCTGCTACACCATTCTTCACAAGGTCGCTCGTAGTTTTGCCCTCACCATCCAGCACCTTGATTCCCACCTTCGTGATTCTATACTCGTATTTTATTTGGTTCTGAGAGCCTTGGATACTGTTGAGGACGATACAAGTTTGCCTGCAAAAGTGAGAATACCTACTTTGGAAACATTTCATAGCCGTATAGATGATCCACGCTGGAGTTTTTCATGTGGTACCGAAGACTGTAAGATTCTTATGGAGCAATTTCATCATGTTAGAACTGCCTTTCTTGAGCTCAAAAGAAGTCATCAGGATGTGATTAGAGAAGTTACCAGACAGATGGGAGCTGGAATGGCGAAATATATTTGCAAGGAGATAGAGACAATAGAAGATCTGAATGAGTATGCTCATTACGTAGCAGGGCTCGTAGGGTTAGGACTTTCTAAACTGTTTTATGCTTCTGGTTCAGAGGATTTAGCTCCTGAATCCCTTTCCAATTCAATGGGTTTACTCCTTCAGAATGCAAATATCATTCGTGACTATTTGGAAGATATTAACGAGATACCAATGCCACGAACGTTTTGGCCTCGTCAAGTTTGGAGTAAATACGTGGACAAACTCGAGGACCTGAAAGACGAGAGGAACTCGGAGAAGGCATTGCAATGTTTGAATGAAATGGTTACAAATGCTTTGGTTCACGTACAACAATGTCTCAAATACTTGTCTGCCTTGAGAGATCCTGCTATTTTTAGATTCTGTGCTGTTCCTCAGGTCGTGGCTATTGGGACCCTAGCTTTATGCTACAACAACATTGACGTTTTCAGGGTTGCTTTAAAATTGAGACGCGGTCTCACGGCTAAACTTATCCACCAAACAAGAACAATGTCGGGTGTCTATGATGCTTTTTTAAAGTTCACTTCCATTATGAAGGCTAAGGTTGAGAAGGATGATCCTAATGCCTCAACTACTCTGAGCAGGATAGAATCAATTGAGAAAATTTGCAAGCAGAATTCTATAACTCCAAGACAACAAAGGGAAAACTACAAGGTCAACAAAGAGTTAGGATATCATTCACCCCAGGGGGTTGCTGTGTATGTTGCCATATGCTTGGCATTTGCATATTTGTATTCCAGCGTGCTCAGCATATACTATACACAGTGGAGTAATGAGTATATACAACAATTACATATTACGTTCGAGAGACATATTGAGTTTTTAGTGGAGTATACAAGAGAAGGAGGGGAGGAAATTGCCACAGCTATGCATGCACATGCATGTTATGTCCTCGTTTGGTATATTGCAAGAAATATCCCGAATTTCCAATCCTACTTGTCCTGGTGCCAAATGGTAGTATACCCACCAGATCCCCTCGCAGGACATTACATTTACACTTCCTGA	1503	0.4158	MASLLGTILKHPEEIYPMLKLKMVIRKAEKVIPDQKPHWVFCYTILHKVARSFALTIQHLDSHLRDSILVFYLVLRALDTVEDDTSLPAKVRIPTLETFHSRIDDPRWSFSCGTEDCKILMEQFHHVRTAFLELKRSHQDVIREVTRQMGAGMAKYICKEIETIEDLNEYAHYVAGLVGLGLSKLFYASGSEDLAPESLSNSMGLLLQNANIIRDYLEDINEIPMPRTFWPRQVWSKYVDKLEDLKDERNSEKALQCLNEMVTNALVHVQQCLKYLSALRDPAIFRFCAVPQVVAIGTLALCYNNIDVFRVALKLRRGLTAKLIHQTRTMSGVYDAFLKFTSIMKAKVEKDDPNASTTLSRIESIEKICKQNSITPRQQRENYKVNKELGYHSPQGVAVYVAICLAFAYLYSSVLSIYYTQWSNEYIQQLHITFERHIEFLVEYTREGGEEIATAMHAHACYVLVWYIARNIPNFQSYLSWCQMVVYPPDPLAGHYIYTS	500

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele48g0105	500	CDD	Trans_IPPS_HH	41	322	IPR033904	GO:0004311
	Lele48g0105	500	FunFam	Squalene synthase 1	36	372	-	-
	Lele48g0105	500	ProSitePatterns	Squalene and phytoene synthases signature 1.	170	185	IPR019845	GO:0016765
	Lele48g0105	500	TIGRFAM	squal_synth: farnesyl-diphosphate farnesyltransferase	38	369	IPR006449	GO:0004310\|GO:0008610
	Lele48g0105	500	SUPERFAMILY	Terpenoid synthases	41	369	IPR008949	-
	Lele48g0105	500	SFLD	Isoprenoid Synthase Type I	38	327	-	-
	Lele48g0105	500	Gene3D	Farnesyl Diphosphate Synthase	37	373	IPR008949	-
	Lele48g0105	500	ProSitePatterns	Squalene and phytoene synthases signature 2.	203	231	IPR019845	GO:0016765
	Lele48g0105	500	Pfam	Squalene/phytoene synthase	47	310	IPR002060	GO:0009058
	Lele48g0105	500	PANTHER	FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE	5	409	IPR044844	GO:0004311
	Lele48g0105	500	SFLD	Squalene/Phytoene Synthase Like	38	327	IPR002060	GO:0009058

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele48g0105	Lele-ChrLele48	1446206	1459409	Dispersed/Tandem

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele45g1310	45	22876796	22882580	Lele48g0105	48	1446206	1459409	hybridization
	Lele46g1410	46	20907573	20910738	Lele48g0105	48	1446206	1459409	hybridization