Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1410 ATGGTGAGCTTATTGGGAACGATTCTGAAGCACCCAGAAGAAATATACCCAATGCTGAAGCTGAAGATGGTGATAAGGAAAGCAGAGAAGGTGATTCCTGATCAGAAACCACATTGGGTTTTCTGCTACACCATTCTTCACAAGGTCGCTCGTAGTTTTGCCCTCACCATTCAGCACCTTGATTCCCACCTTCGTGATTCTATACTCGTATTTTATTTGGTTCTGAGAGCCTTGGATACTGTCGGTGGTACCGAAGACTGTAAGATTCTTATGGAGCAATTTCATCATGTTAGAACTTCCTTTCTTGAGCTCAAAAGAAGTCATCAGGATGTGATTAGAGAAGTTACCAGACAGATGGGAGCTGGAATGGCAAAATTTATTTGCCAGGAGATAGAGACAATAGAAGATCTCAATGAGTATGCTCATTACGTAGCAGGGCTCGTAGGGTTAGGACTTTCTAAACTATTTTATGCTTCTGGTTCAGAGGATTTAGCTCCTGAATCACTTTCCAATTCAATGGGTTTACTCCTTCAGAATGCAAATATCATTCGTGACTATTTGGAAGATATTAATGAGATACCAATGCCACGAACGTTTTGGCCTCGTCAAGTTTGGAGTAAATACGTGGACAAACTCGAGGACCTGAAAGACGAGAGGAACTCGGAGAAGGCATTGCAATGTTTGAATGAAATGGTTTCAAATGCTTTGGTTCACGTACAACAATGTCTCAAATACTTGTCTGCTGTGAAAGATCCTGCTATTTTTAGAGTCTGTGCTGTTCCTCAGGTCGTAGCTATTGGGACCCTAGCTTTATGCTACAACAACATTGATGTTTTCAGGGTTGCTTTAAAATTGAGACGCGGTCTCACGGCTAAACTTATCCACCAAACAAGAACAATGTCGGATGTCTACGATGCTTTTTTGAAGTTCACTTCCATTATGAAGGCTAAGGTTGAGAAGGATGATCCTAATGCCTCAACTACGCTGACCAGGATAGAAGCAATTCAGGAAATTTGCAAGCAGAATTCTATAACTCCAAGACAACAAAGGGAAAATTACAAGGTCAACAAAGAGTTAGGATATCATTCACCCCAGGACTTGTTGTCTTCTTAG 1113 0.4124 MVSLLGTILKHPEEIYPMLKLKMVIRKAEKVIPDQKPHWVFCYTILHKVARSFALTIQHLDSHLRDSILVFYLVLRALDTVGGTEDCKILMEQFHHVRTSFLELKRSHQDVIREVTRQMGAGMAKFICQEIETIEDLNEYAHYVAGLVGLGLSKLFYASGSEDLAPESLSNSMGLLLQNANIIRDYLEDINEIPMPRTFWPRQVWSKYVDKLEDLKDERNSEKALQCLNEMVSNALVHVQQCLKYLSAVKDPAIFRVCAVPQVVAIGTLALCYNNIDVFRVALKLRRGLTAKLIHQTRTMSDVYDAFLKFTSIMKAKVEKDDPNASTTLTRIEAIQEICKQNSITPRQQRENYKVNKELGYHSPQDLLSS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1410 370 ProSitePatterns Squalene and phytoene synthases signature 1. 140 155 IPR019845 GO:0016765
Lele46g1410 370 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 5 81 IPR044844 GO:0004311
Lele46g1410 370 CDD Trans_IPPS_HH 41 292 IPR033904 GO:0004311
Lele46g1410 370 SUPERFAMILY Terpenoid synthases 41 339 IPR008949 -
Lele46g1410 370 Pfam Squalene/phytoene synthase 47 281 IPR002060 GO:0009058
Lele46g1410 370 Gene3D Farnesyl Diphosphate Synthase 37 83 IPR008949 -
Lele46g1410 370 ProSitePatterns Squalene and phytoene synthases signature 2. 173 201 IPR019845 GO:0016765
Lele46g1410 370 Gene3D Farnesyl Diphosphate Synthase 84 339 IPR008949 -
Lele46g1410 370 FunFam Squalene synthase 82 339 - -
Lele46g1410 370 TIGRFAM squal_synth: farnesyl-diphosphate farnesyltransferase 84 339 IPR006449 GO:0004310|GO:0008610
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1410 Lele-ChrLele46 20907573 20910738 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g1410 46 20907573 20910738 Lele47g0098 47 705164 723952 hybridization
Lele46g1410 46 20907573 20910738 Lele48g0105 48 1446206 1459409 hybridization