Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1310 ATGGCGAGCTTATTGGGAACGATTCTGAAGCACCCAGAAGAAATATACCCAATGTTGAAGCTGAAGATGGTGATAAGGAAAGCAGAGAAGGTGATTCCTGATCAGAAACCACATTGGGTTTTCTGCTACGCCATTCTTCACAAGGTCGCTCGAAGTTTTTCCCTCACCATTCAGAACCTTGATTCCCACCTTCGTGATTCTATACTCGTATTTTATTTGGTTCTGAGAGCCTTGGATACCGTTGAGGACGATACAAGTTTGCCTGCAAAAGTGAGAATACCTATTTTGCAAACATTCCATAGCCGTATAGATGATCCACGCTGGAGTTTTTCATGTGGTACCGAAGACTGTAAGATTCTTATGGAGCAATTTCATCATGTTAGAACTGCCTTCCTTGAGCTCAAAAGAAGTCATCAGGATGTTATTAGAGAAGTTACCAGACAGATGGGAGCTGGAATGGCAAAAATTATTTGCAAGGAGATAGAGACAATAGAAGATCTGAATGAGTATGCTCATTACGTAGCGGGGCTCGTAGGTTTAGGACTTTCTAAGCTCTTCTATGCTTCTGGATCAGAGGATTTAGCTCCTGAATCCCTTTCCAATTCAATGGGTTTACTCCTTCAGAATGCAAATATCATTCGTGACTATTTGGAAGATATTAATGAGATACCAATGCCACGAACGTTTTGGCCTCGTCAGGTTTGGAGTAAATATGTCGACAAACTCGAGGACTTGAAAGACGAGAAGAATTCCGAGAAGGCATTGCAATGTTTGAATGAAATGGTCACAAATGCTTTGGTTCACGTACAACAATGTCTCAAATACTTGTCTGCTTTGAGAGATCCTGCTATTTTCAGATTCTGTGCTGTTCCTCAGGTCGTGGCTATTGGGACCCTAGCTTTATGCTACAACAACATTGATGTTTTCAGAGTTGCTTTGAAATTAAGACGCGGTCTCACGGCTAAACTCATCCACCAAACAAGAACAATGTCCGATGTCTATGATGCTTTTTTAGAGTTCATTTCCATTATGAAATCTAAGGTTGAGAAGGACGATCCTAATGCCTCGACTACGTTGAGCAGAATAGAAGCAATTCAGAAAATTTGCAAGCAGAATTCTATAACTCCAAAACGACAAAGGGAAAACTACAAGGTCAACAAAGAATTAGGATACAATTCACCCCAGGGGGTTGCTGTATATGTTGCCATATGCTTGGCATTTGCATATCTGTATTCCAGCGTGCTGAATATATACTGATTGAGAAATCAGGATATTTCTCAGTCTCCTGTATTTTGA 1296 0.4074 MASLLGTILKHPEEIYPMLKLKMVIRKAEKVIPDQKPHWVFCYAILHKVARSFSLTIQNLDSHLRDSILVFYLVLRALDTVEDDTSLPAKVRIPILQTFHSRIDDPRWSFSCGTEDCKILMEQFHHVRTAFLELKRSHQDVIREVTRQMGAGMAKIICKEIETIEDLNEYAHYVAGLVGLGLSKLFYASGSEDLAPESLSNSMGLLLQNANIIRDYLEDINEIPMPRTFWPRQVWSKYVDKLEDLKDEKNSEKALQCLNEMVTNALVHVQQCLKYLSALRDPAIFRFCAVPQVVAIGTLALCYNNIDVFRVALKLRRGLTAKLIHQTRTMSDVYDAFLEFISIMKSKVEKDDPNASTTLSRIEAIQKICKQNSITPKRQRENYKVNKELGYNSPQGVAVYVAICLAFAYLYSSVLNIYXLRNQDISQSPVF 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1310 431 SUPERFAMILY Terpenoid synthases 41 369 IPR008949 -
Lele45g1310 431 Pfam Squalene/phytoene synthase 47 311 IPR002060 GO:0009058
Lele45g1310 431 TIGRFAM squal_synth: farnesyl-diphosphate farnesyltransferase 38 369 IPR006449 GO:0004310|GO:0008610
Lele45g1310 431 CDD Trans_IPPS_HH 41 322 IPR033904 GO:0004311
Lele45g1310 431 ProSitePatterns Squalene and phytoene synthases signature 1. 170 185 IPR019845 GO:0016765
Lele45g1310 431 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 5 409 IPR044844 GO:0004311
Lele45g1310 431 SFLD Squalene/Phytoene Synthase Like 38 327 IPR002060 GO:0009058
Lele45g1310 431 Gene3D Farnesyl Diphosphate Synthase 37 373 IPR008949 -
Lele45g1310 431 FunFam Squalene synthase 1 36 372 - -
Lele45g1310 431 ProSitePatterns Squalene and phytoene synthases signature 2. 203 231 IPR019845 GO:0016765
Lele45g1310 431 SFLD Isoprenoid Synthase Type I 38 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1310 Lele-ChrLele45 22876796 22882580 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1310 45 22876796 22882580 Lele47g0098 47 705164 723952 hybridization
Lele45g1310 45 22876796 22882580 Lele48g0105 48 1446206 1459409 hybridization