Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0086 ATGGAAGTTAGCCTCACTTCCAATCACTATACTCTTAGCTTAACCTCACGTTCTCCTGCTTTCTCTCTTTCCAATCTCCGGTCCATCCGTACACAATTCCTTGGTTGTTCTCATAGTCTCAGGCTTCCCGGAGGGGTTCTCTCTAGAAATAACAAATGCAAGAAGTTGCGACTTCTTCAACTCCATTCTCCTCGTTTTATCTTCAAAGCATCTTTGAGTTCTCACTCTGTCGTCGTCGTCGTCACCTTAGTTACTTTATCTGCCGTTTCTCTGTTCTACTATAATTACATCAAGAGAAAGAAGAATGCCAAAGAGATACTGGGACAACCAAAATTTGCATTATCACAGCAAGGAAGTAATATTGGGAACCAGGCCATCGAAAGTCAGATTCTTTGCTTCCAGGAATTTCAAGGGGAGAACCTTCTAAAGGAAATTGGGATAATGGAGGATAAATCTGACAAAGAAAACCGTGATTTTGAGGGCAAAGAGGCCCAACTAACATATTGGATATCTCCTATGGTGCAAGAAGAGGCTGTTGTGACTGAGAAATTAGAGTCACCTTCTGATGTTCTAACCTCTAGCGTTAACATCGCTTCATCTTCAAACAGCTCCAAGGTTGTAGATGAATCTCATTTGTCCATGGAATTGCAATCAAGTTCTTTTGAGCCTCTGTCTTTTGCTGCAGAGATGACTGAATTACAAGTGGAAGAAACAAGAGATAAGGCCCACTCTGATTCTGAGTTGCCTATAATTACAAATAAATCTGAGCATACTGCTTCTTTTGATCCTGTAAACAATGAATTCACAATAGTGAAAGATCATGCGAAAGAAAAAATTGAACTTGGTGCCATCAGCAGTGATGTCCTAATTGGCGAATCCACTAGGCAAGAACTGTACATGTTTTATCAGGTCAACATGTCTTCAACAGGATCCATGTCACCATTGAATAGTTTAAAATCACCACCGTCTCATGCTTCTTTCATGAAGAAAAAAGAACTGCAATCCACAATGGGGAATAATGCTTTAAAAGGACCAGAATCTTTAAAAGAGGTTTCTCTACAAATTTCAGAGAATGTTGAAGGAGTGGAATCAACAGCCAGTTACAAAGAAGGCTATCCCCAGCAGAATGGAAGCCATTCCTTGAGGAAACACAACAGACCTCTGAGCAACAGGGGGAAAACCAATCTGGATCAGAAAAGTAATGAACTTTTTCTCCAGAATTCTGACTCAATTGGGGAGTATTTTGATAAGAAAAATGGTCATTCTCAACATCTTAGAACATATAATTCTTTGCTAAAGGATGAAAGGTTACATGAATGTGTTGAATTGCTTAAAGACATGGAAATGAAGGGAATTTTAGATATGACTAAGGTTTATCATGCAAAGTTTTTTAACGTCTGCAAGACACAAAAGGCTGTTAGAGAAGCTTTTGATTACATTAAGCTTATTCCAAATCCACAATTGAGCACATTTAATATGCTTATGTCCGTGTGTTCAAGCTCTCAAGATTCAGAAGGGGCTTTCCAAGTTCTGCAGCTTGTTCAGGGGGCCGGATTAAAACCTGATTGCAAACTTTATACCACTTTGATATCAACATGTGCCAAGAGTGGTAAAGTTGATCAGATGTTTGAGGTATTTCACAATATGGTTAATTCTGGAGTTGAACCCAATGTTCATACTTATGGGGCACTTATTGACGGTTGTGCTAGAGCTGGGCAAGTTGCTAAAGCATTTGGTGCTTATGGGATAATGAGGTCTAAGAAATTGAAGCCAGATCGTGTTGTATTCAATGCACTTATAGCTGCATGTGCTAAGTCAGGATCAGTGGATCGTGCTTTTGATGTTTTAGCAGAAATGGCTTCAGAATTGCAACCTATTGAACCAGATCACATAACTATCGGTGCATTAATGAAGGCATGTGCAAATGCTGGTCAGGTTGAACGAGCACAAGAAGTGTATAAGTGGTTAGACCAATATAGTATAAAGGGAACTCCGGAGGTCTACACTATCGCCATTAATTCTTGCAGCCAAACTGGAGATTGGGAATTTGCTTGTAGGGTATACAGTGACATGATTGGGAAAGGGGTTTTCCCAGATGAGATGTTTCTGAGTGCACTAATAGATTTTGCCGGGCATGCTGGAAAGCTGGATGCTGCCTTTGAAATCCTACAAGAAGCTCGTAACCGAGGAATACATATTGGCAAAATATCATACAGCTCTTTGATGGGAGCCTGTAGCAATACTGGAAGTTGGGAGAAAGCATTGGAGCTATATGAGGATCTTAAGTCCCGTAAATTGGTACATGGTGTTTCAACAGTGAATGCTTTAATCACTGCACTGTGTGATGGGGATCAATTTCGCAAGGCTATGGAAGTTTTGTTTGAAATGAAAGAGTTGGGCCTATGCCCAAACAGCATCACATACTCAATACTTATAGTAGCAAGTGAGAAAAAGGATGATCTGGAAGCAGCTCAAATGCTCCTATCTCAAGCAAAAATGGATGGTGTTTCCCCTAATCTTGTCATGTGTAGATGTATAACCTGGATGTGCTTGAGGAGATATGAGAGGGCTTGCAATGTTGGTGAACCTGGTTTATCTTTTGACTCAAGACAAGAACATGTTAATAATAAATGGACGGCACTGGCCTTAATGGTGTATCGTGAGATGATTAGAGATGGTACAGTTCCTACTAGTGAAATTCTGTCACATATTTTTGGATGCCTGCGACTCCCTTATGACGCCTCTTTGAAAAATAATCTTATTGAGGACCTGGGAGTGAGTGCTGAAACTTCAGAACGCTCAAACCTCTGTTCATTGATCGATGGATTTGGTGAATTCGATCCACGTGCCTTTTCTCTACTTGAGGAAGCTGCTTCTCTTGGAATTGTTCCATTTGTATCTTTTAAAGTGAATCCTATTGTGGCGGATTTAAAGGAATTGTACAATTTTACCGCTGAGGTATACCTCTTAACTGTTCTGAAGGGTCTCAAGCATCGGCTTGCCGCAGGCACAAAGCTACCCAACTTAATCATCTTATTGCCTGTAAAGAAAATAAAAGTTGCAACTTCCAAGGGGGAGAAACTAATTAACGTTTCAGGAAGGGTTGGCCAGGCAGTTGCGGCACTGTTGAGAAGGCTGAGAATACCATACCAGGGCAATGAATCGTTTGGAAAGATCAGAATTAGTGGAATAACTTTGAGAAAATGGCTTCAGCCAAAACTTGAATCTCATTTCGGATCTCCTTTCAGTGGAAAACCAAGTGACTTGAGCTTATCACAATCACGACTTGGCAAAGGTATCAGTTGTCAACAGCGAAACATTCGAACCGGCAATCTGTCCTTGGATTAA 3348 0.4053 MEVSLTSNHYTLSLTSRSPAFSLSNLRSIRTQFLGCSHSLRLPGGVLSRNNKCKKLRLLQLHSPRFIFKASLSSHSVVVVVTLVTLSAVSLFYYNYIKRKKNAKEILGQPKFALSQQGSNIGNQAIESQILCFQEFQGENLLKEIGIMEDKSDKENRDFEGKEAQLTYWISPMVQEEAVVTEKLESPSDVLTSSVNIASSSNSSKVVDESHLSMELQSSSFEPLSFAAEMTELQVEETRDKAHSDSELPIITNKSEHTASFDPVNNEFTIVKDHAKEKIELGAISSDVLIGESTRQELYMFYQVNMSSTGSMSPLNSLKSPPSHASFMKKKELQSTMGNNALKGPESLKEVSLQISENVEGVESTASYKEGYPQQNGSHSLRKHNRPLSNRGKTNLDQKSNELFLQNSDSIGEYFDKKNGHSQHLRTYNSLLKDERLHECVELLKDMEMKGILDMTKVYHAKFFNVCKTQKAVREAFDYIKLIPNPQLSTFNMLMSVCSSSQDSEGAFQVLQLVQGAGLKPDCKLYTTLISTCAKSGKVDQMFEVFHNMVNSGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKKLKPDRVVFNALIAACAKSGSVDRAFDVLAEMASELQPIEPDHITIGALMKACANAGQVERAQEVYKWLDQYSIKGTPEVYTIAINSCSQTGDWEFACRVYSDMIGKGVFPDEMFLSALIDFAGHAGKLDAAFEILQEARNRGIHIGKISYSSLMGACSNTGSWEKALELYEDLKSRKLVHGVSTVNALITALCDGDQFRKAMEVLFEMKELGLCPNSITYSILIVASEKKDDLEAAQMLLSQAKMDGVSPNLVMCRCITWMCLRRYERACNVGEPGLSFDSRQEHVNNKWTALALMVYREMIRDGTVPTSEILSHIFGCLRLPYDASLKNNLIEDLGVSAETSERSNLCSLIDGFGEFDPRAFSLLEEAASLGIVPFVSFKVNPIVADLKELYNFTAEVYLLTVLKGLKHRLAAGTKLPNLIILLPVKKIKVATSKGEKLINVSGRVGQAVAALLRRLRIPYQGNESFGKIRISGITLRKWLQPKLESHFGSPFSGKPSDLSLSQSRLGKGISCQQRNIRTGNLSLD 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0086 1115 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Lele48g0086 1115 MobiDBLite consensus disorder prediction 363 395 - -
Lele48g0086 1115 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 664 698 IPR002885 -
Lele48g0086 1115 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 734 768 IPR002885 -
Lele48g0086 1115 Pfam PPR repeat family 770 812 IPR002885 -
Lele48g0086 1115 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 592 622 IPR002885 -
Lele48g0086 1115 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Lele48g0086 1115 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 15 1114 - -
Lele48g0086 1115 Gene3D Tetratricopeptide repeat domain 624 735 IPR011990 GO:0005515
Lele48g0086 1115 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 769 803 IPR002885 -
Lele48g0086 1115 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 804 838 IPR002885 -
Lele48g0086 1115 Gene3D Tetratricopeptide repeat domain 740 860 IPR011990 GO:0005515
Lele48g0086 1115 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 436 567 - -
Lele48g0086 1115 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 557 591 IPR002885 -
Lele48g0086 1115 Pfam Pentacotripeptide-repeat region of PRORP 490 628 IPR033443 -
Lele48g0086 1115 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 622 713 - -
Lele48g0086 1115 Pfam PPR repeat 667 696 IPR002885 -
Lele48g0086 1115 Pfam PPR repeat 430 452 IPR002885 -
Lele48g0086 1115 Pfam PPR repeat 736 765 IPR002885 -
Lele48g0086 1115 TIGRFAM PPR: pentatricopeptide repeat domain 559 592 IPR002885 -
Lele48g0086 1115 TIGRFAM PPR: pentatricopeptide repeat domain 772 804 IPR002885 -
Lele48g0086 1115 TIGRFAM PPR: pentatricopeptide repeat domain 490 523 IPR002885 -
Lele48g0086 1115 TIGRFAM PPR: pentatricopeptide repeat domain 525 558 IPR002885 -
Lele48g0086 1115 TIGRFAM PPR: pentatricopeptide repeat domain 736 767 IPR002885 -
Lele48g0086 1115 TIGRFAM PPR: pentatricopeptide repeat domain 667 700 IPR002885 -
Lele48g0086 1115 TIGRFAM PPR: pentatricopeptide repeat domain 594 620 IPR002885 -
Lele48g0086 1115 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 714 861 - -
Lele48g0086 1115 Gene3D Tetratricopeptide repeat domain 413 623 IPR011990 GO:0005515
Lele48g0086 1115 MobiDBLite consensus disorder prediction 363 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0086 Lele-ChrLele48 1285329 1295331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0086 453 839 Glycosyltransferase AT1G05670 26.478 3.52e-34 139
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1329 45 23030096 23039790 Lele48g0086 48 1285329 1295331 hybridization
Lele46g1425 46 21076196 21086160 Lele48g0086 48 1285329 1295331 hybridization