Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1329 ATGCTTTTTCTCAGAGCTCACTCCCTCCTCTCCTTCCTGCTCAAATTGCTAATCCTCTCTCTCTCAACCTTCACATACTCAGTCTCTTTCTTTCTTCTTCCTTCTTCATCCATGGAAGTTAGCCTCACTTCCAATCATTATACTTTTAGCTTAACCTCACGTTCTCATTCCGCTTTCTCTCTTTCCAATCTCCGATCCATCCGTACGCAATTCCTTGGTTCTTCTCGTAGTTTCAGGCCTGTTCGCTCTAGAAATAACAAATGCAAGAAGTTGCGGCTTCTTCAACTCCATTCTCCTCGTTTTATCTTCAAAGCATCTTTGAGTTCTCACTCTGTTGTCGTCGTCGTTACCTTAGTTACTTTATCTGCAGTTTCTCTGCTCTACTATAATTACATCAAGAGAAAGAAGAATCCCAAGGAGATACTGGGTCAGCCAAAATTTGCATTATCACAGCAAGGAAGTAATATTGGGAACCAGGCCATCGAAAGTCAGATTCTTTGCTTCCTGGAATTTCAAGGGGAGAACCTGCTAAAGGAAATTGGGATATTGGAGGATAAATCTGACAAAGAAAACCATGATTTTGAGGGCAAAGAAGCTCAACTAACATATTGGACATCTCCTATGGTGCAAGAAGAGGCTGTTGTGACTGAGAAATTAGAGTCTCCTTCTGATGTTCTAACCTGTAGCGTTAATACTGCTTCATCTTCAAACAGTTCCGAGGTTGTAGATGAATCTCATTTGTCCATGGAATTCCAATCAAGTTCCTTTGAGGCTCTATGTTTTGCTGCAGAGATGACTGAATTACAAGTGGAAGAAACAAGAGATAAAGCCCACTCTGATTCTGAGTTGCCTATAATTATAAATAAATCCGAGCATACTGCTTCTTTTGATCCTGTAAACAATGAATTCAAAATAGTGAAAGATTATGCTAAAGAAAAAATTGAACTTGGTGCCATCAGCAGCGATGTCCTAATTGACGAATCCACTAGGCAAGAACTGTACATGTTTTATCAGGTCAACATGTCTTCAACAAGATCCATGTCACCATTGAATGGTTTAAAATCACCACCTTCTCATGCTTCTTTCATGAAGAAAAAAGAATTGCAATCCAAAATGGGGAATAATGCTTTAAAAGGGCCAGAATCATTAGAAGAGGTCTCTCTACAAATTTCAGGAGTAGAACCAAGAGCTAGTTACAAAGAAGGCTATCCCCAGCAAAATGGAAGTTATTCCTTTAGGAAACGTAGCAGACCGCTGAGCAACAGGGGGAAAACCTATCTGAATCAGAAAAGTAACGAAGTTCTTCCCCAGAATTCTGACTCAATCGGGGAGCATGTTAACAAGAAAAATGGTCATTCTCAACATCTTAGAACATATAATTCTTTGCTAAAGGATGGAAGGTTACATGAATGTGTTGAATTGCTTAAAGACATGGAAATGAAGGGAATTTTAGATATGACTAAGGTTTATCATGCAAAGTTTTTTAACATCTGCAAGACACAAAAGGTTGTTAGAGAAGCTTTTGATTACATTAAGCTTATTCCAAATCCACAATTGAGCACATTTAATATGCTTATGTCCGTGTGTTCAAGCTCTCAAGATTTAGAAGGGGCTTTCCAAGCTCTGAAGCTTGTTCAGGGGGCCGGATTCAAACCTGATTGCAAACTTTATACCACTTTGATATCAACATGTGCCAAGAGTGGTAAAGTTGATCAGATGTTTGAGGTATTTCACAATATGGTTAATTCTGGAGTTGAACCTAATGTTCATACTTATGGGGCACTTATTGATGGTTGTGCTAGAGCTGGGCAAGTTGCTAAAGCATTTGGTGCTTATGGGATAATGAGGTCTAAGAAATTGAAGCCAGATCGTGTTATATTCAATGCACTTATAGCTGCATGTGCTAAGTCAGGAGCAGTGGATCGTGCTTTTGATGTTTTAGCAGAAATGGCTGCAGAATTGCAACCTATTGAACCAGATCACATAACTATCGGTGCATTAATGAAGGCATGTGCAAATGCTGGTCAGGTTGAACGAGCACGAGAAGTGTATAAGTGGTTAAACCAATATAGTATAAAGGGAACACCGGAGGTCTACACTATTGCCATCAATTCTTGCAGCCAAACTGGAGATTGGGAATTTGCATGTAGGGTATACAGTGACATGATTGAGAAAGGGGTTTTCCCAGATGAGATGTTTCTGAGTGCACTAATAGATTTTGCTGGACACGCTGGAAAGCTAGATGCTGCCTTTGAAATCCTACAAGAAGCTCGTAACCGAGGAATAAATATTGGCAAAATATCATACAGCTCTTTGATGGGAGCCTGTAGCAATACTGGAAATTGGGAGACAGCATTGGAGTTATACGAGGATCTTAAGTCCCGTAAATTGGTACATAGTGTTTCAACAGTTAATGCTTTGATCACTGCACTGTGTGATGGGGATCAATTTCACAAGGCTATGGAGGTTTTGTTTGAAATGAAAGAGTTGGGCCTATGCCCAAACAGCATCACATACTCAATACTTATAGTAGCAAGTGAGAAAAAGGACGATCTGGAAGCAGCTCAAATGCTCCTATCTCAAGCAAAAATGGATGGTGTTTCCCCTAATCTTGTCATGGGTAGATGTATAACCTGGATGTGCTTGAGGAGATATGAGAGGGCTTGCGATGTTAGTGAACCTGGTTTATCTTTTGATTCAAGACAAGCACATGTTAATAATAAATGGACATCACTGGCCTTAATGGTGTATCGTGAGATGATTAGAGATGGTACGGTGCCTACTAGTGAAATTCTGTCACATACTTTTGGATGCCTGCAACTCCCTTATGATGCCTCTTTGAAAAATAATCTTATTGAGAACCTGGGAGTAAGTGCTGAAACTTCAAAACGCTCAAACCTATGTTCATTGATCGATGGATTTGGTGAATATGATCCCCGTGCTTTTTCACTGCTTGAGGAAGCTGGCTCTCTTGGAATTATTCCATTTGTATCTTTTAAAGTGAATCCTATTGTGGCGGATTTAAAGGAATTGCGCAATTTTACTGCTGAGGTATACCTCTTAACTGTTTTGAAGGGTCTCAAGCATCGGCTTGCTGCAGGCACAAAGTTACCCAACTTAATCATCTTATTGCCTGTAGAGAAAACAAAAGTTGCAACTTCCAAGGGGGAGAAATTTATTAACGTTTCAGGAAGGGTTGGCCAGGCAGTTGCAGCACTGTTGAGAAGGCTGAGAATACCGTACCAGGGCAATGAATCATTTGGAAAGATCAGAATTACTGGAGTAACTTTGAGAAAATGGCTTCAGCCAAAACTTGAATCTCCTTTTGGATCTCATTTCAGGGGAAAACCAGGTGACTTTAGCTTATCACAGTCACGACTCGGCAAAGGTATCAGTCTTCAACAGCGAAACATTCGAACCGGCAATCTGTCCTTGGATTAA 3441 0.4019 MLFLRAHSLLSFLLKLLILSLSTFTYSVSFFLLPSSSMEVSLTSNHYTFSLTSRSHSAFSLSNLRSIRTQFLGSSRSFRPVRSRNNKCKKLRLLQLHSPRFIFKASLSSHSVVVVVTLVTLSAVSLLYYNYIKRKKNPKEILGQPKFALSQQGSNIGNQAIESQILCFLEFQGENLLKEIGILEDKSDKENHDFEGKEAQLTYWTSPMVQEEAVVTEKLESPSDVLTCSVNTASSSNSSEVVDESHLSMEFQSSSFEALCFAAEMTELQVEETRDKAHSDSELPIIINKSEHTASFDPVNNEFKIVKDYAKEKIELGAISSDVLIDESTRQELYMFYQVNMSSTRSMSPLNGLKSPPSHASFMKKKELQSKMGNNALKGPESLEEVSLQISGVEPRASYKEGYPQQNGSYSFRKRSRPLSNRGKTYLNQKSNEVLPQNSDSIGEHVNKKNGHSQHLRTYNSLLKDGRLHECVELLKDMEMKGILDMTKVYHAKFFNICKTQKVVREAFDYIKLIPNPQLSTFNMLMSVCSSSQDLEGAFQALKLVQGAGFKPDCKLYTTLISTCAKSGKVDQMFEVFHNMVNSGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKKLKPDRVIFNALIAACAKSGAVDRAFDVLAEMAAELQPIEPDHITIGALMKACANAGQVERAREVYKWLNQYSIKGTPEVYTIAINSCSQTGDWEFACRVYSDMIEKGVFPDEMFLSALIDFAGHAGKLDAAFEILQEARNRGINIGKISYSSLMGACSNTGNWETALELYEDLKSRKLVHSVSTVNALITALCDGDQFHKAMEVLFEMKELGLCPNSITYSILIVASEKKDDLEAAQMLLSQAKMDGVSPNLVMGRCITWMCLRRYERACDVSEPGLSFDSRQAHVNNKWTSLALMVYREMIRDGTVPTSEILSHTFGCLQLPYDASLKNNLIENLGVSAETSKRSNLCSLIDGFGEYDPRAFSLLEEAGSLGIIPFVSFKVNPIVADLKELRNFTAEVYLLTVLKGLKHRLAAGTKLPNLIILLPVEKTKVATSKGEKFINVSGRVGQAVAALLRRLRIPYQGNESFGKIRITGVTLRKWLQPKLESPFGSHFRGKPGDFSLSQSRLGKGISLQQRNIRTGNLSLD 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1329 1146 Gene3D Tetratricopeptide repeat domain 448 655 IPR011990 GO:0005515
Lele45g1329 1146 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 53 1145 - -
Lele45g1329 1146 Gene3D Tetratricopeptide repeat domain 656 766 IPR011990 GO:0005515
Lele45g1329 1146 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 653 744 - -
Lele45g1329 1146 Pfam PPR repeat 460 483 IPR002885 -
Lele45g1329 1146 Pfam PPR repeat 767 796 IPR002885 -
Lele45g1329 1146 Pfam PPR repeat 698 727 IPR002885 -
Lele45g1329 1146 Pfam PPR repeat 665 685 IPR002885 -
Lele45g1329 1146 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 695 729 IPR002885 -
Lele45g1329 1146 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 623 653 IPR002885 -
Lele45g1329 1146 Pfam Pentacotripeptide-repeat region of PRORP 521 659 IPR033443 -
Lele45g1329 1146 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 587 IPR002885 -
Lele45g1329 1146 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
Lele45g1329 1146 TIGRFAM PPR: pentatricopeptide repeat domain 521 554 IPR002885 -
Lele45g1329 1146 TIGRFAM PPR: pentatricopeptide repeat domain 698 731 IPR002885 -
Lele45g1329 1146 TIGRFAM PPR: pentatricopeptide repeat domain 590 623 IPR002885 -
Lele45g1329 1146 TIGRFAM PPR: pentatricopeptide repeat domain 556 589 IPR002885 -
Lele45g1329 1146 TIGRFAM PPR: pentatricopeptide repeat domain 803 835 IPR002885 -
Lele45g1329 1146 TIGRFAM PPR: pentatricopeptide repeat domain 767 798 IPR002885 -
Lele45g1329 1146 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 835 869 IPR002885 -
Lele45g1329 1146 Gene3D Tetratricopeptide repeat domain 767 891 IPR011990 GO:0005515
Lele45g1329 1146 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Lele45g1329 1146 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 800 834 IPR002885 -
Lele45g1329 1146 MobiDBLite consensus disorder prediction 397 424 - -
Lele45g1329 1146 Pfam PPR repeat family 800 843 IPR002885 -
Lele45g1329 1146 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 467 598 - -
Lele45g1329 1146 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 765 799 IPR002885 -
Lele45g1329 1146 MobiDBLite consensus disorder prediction 402 424 - -
Lele45g1329 1146 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 745 892 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1329 Lele-ChrLele45 23030096 23039790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1329 459 936 Glycosyltransferase AT1G05670 24.248 8.63e-36 144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1329 45 23030096 23039790 Lele47g0082 47 556190 566202 hybridization
Lele45g1329 45 23030096 23039790 Lele48g0086 48 1285329 1295331 hybridization