Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1425 ATGGAAGTTAGCCTCACTTCCAATCACTATACTCTTAGCTTAACCTCACGTTCTCCTTCTGCTTTCTCTCTTTCCAATCTCCGATCCATCCGTACTCAATTCCTTGGTTGTTCTCATAGTCTCGGGCCTCCCGGAGGTGTTCGCTCTAGAAATAATAAATGCCAGAAGTTGCGACTTCTTCAACTCCATTCTCCTCGTTTTATCTTCAAAGCATCTTTGAGTTCTCACTCTGTTGTCGTCGTCGTCGTCACCTTAGTTACTTTATCTGCCGTTTCTCTGTTCTACTATAATTACATCAAGAGAAAGAAGAATGCCAAAGAGATACCGGGACAGCCAAAATTTGCATTATCACAGCAAGGAAGTAATATTGGGAACCAGGCCATCGAAAGTCAGATTCTTTGCTTCCAGGAATTTCAAGGGGAGAACCTGCTAAAGGAAATTGGGATATTGGAGGATAAATCTGACAAAGAAAACCATGATTTTGAGGGCAAAGAGGCCCAACTAACATATTGGACATCTCCTATTGTGCAAGAAGAGTCTGTTGTGACTGACAAATTAGAGTCACCTTCTGATGTTCTAACCTCTAGCTTTAACACCGCTTCATCTTCAAACAGCTCCAAGGTTGCAGATGAATCTCATTTGTCCATGGAATTCCAATCAAGTTCTTTTGAGCCTCTATCTTTTGCTGCAGAGATGACTGAATTACAAGTGGAAGAAACAAGAGATAAGGCCCACTCTGATTCTGAGTTGCCTATAATTATAAATAAATCCGAGCATACTGCTTTTTTTGATCCTGTAAACAATGAATTCACAATAGTGAAAGATCATGCTAAAGAAAAAATTGAACTTGGTGCCATCAGCAGTGATGTCCTAATTGGCGAATCCACTAGGCAAGAACTATACATGTTTTATCAGTTCAACATGTCTTCAACAGGATCCATGTCACAATTGAATAGTTTAAAATCACCACCTTCTCATGCTTCTTTCATGAAGAAAAAAGAACTGCAATCCACGATGGGGAATAATGCTTTAAAAGGACCAGAATCTTTAAAAGAGGCTTCTCTACAAATTTCAGAGAATATTGAAGGAGTGGAATCAAGAGCCAGTTACAAAGAAGGCTATCCCCAGCAAAATGGAAGTCATTCCTTGAGGAAACGCAACAGACCTCTGAGCAACAGGGGGAAAACCAATCTGGATCAGAAAAGTAATGAATTTTTTCCCCAGAATTCTGACTCAATTGGGGAGTATGTTGATAAGAAAAATGGTCATTCTCAGCATCTTAGAACATATAATTCTTTGCTAAAGGATGAAAGGTTACATGAATGTGTTGAATTGCTTAAAGACATGGAAATGAAGGGAATTTTAGATATGACTAAGGTTTATCATGCAAAGTTTTTTAACTTCTGCAAGACACAAAAGGCTGTTAGAGAAGCTTTTGATTACATTAAGCTTATTCCAAATCCACAATTGAGCACATTTAATATGCTTATGTCCGTGTGTTCAAGCTCTCAAGATTCAGAAGGGGCTTTCCAAGTTCTGCAGCTTGTTCAGGGGGCCGGATTAAAACCTGATTGCAAACTTTATACCACTTTGATATCAACATGTGCCAAGAGTGGTAAAGTTGATCAGATGTTTGAGGTATTTCACAATATGGTTAATTCTGGAGTTGAACCTAATGTTCATACTTATGGGGCACTTATTGACGGTTGTGCTAGAGCTGGACAAGTTGCTAAAGCATTTGGTGCTTATGGGATAATGAGGTCTAAGAAATTGAAGCCAGATCGTGTTGTATTCAATGCACTTATAGCTGCATGTGCTAAGTCAGGAGCAGTGGATCGTGCTTTTGATGTTTTAGCAGAAATGGCTTCAGAATTGCAACCTATTGAACCAGATCACATAACTATCGGTGCATTAATGAAGGCATGTGCAAATGCTGGTCAGGTTGAACGAGCACAAGAAGTGTATAAGTGGTTAGACCAATATAGTATAAAGGGAACTCCGGAGGTCTACACTATTGCCATTAATTCTTGCAGCCAAACTGGAGATTGGGAATTTGCATGTAGGGTATACAGTGACATGATTGGGAAAGGGGTTTTCCCTGATGAGATGTTTCTGAGTGCACTAATAGATTTTGCCGGACATGCTGGAAAGCTGGATGCTGCATTTGAAATCCTACAAGAAGCTCGTAACCGAGGAATAAATATTGGCAAAATATCATACAGCTCTTTGATGGGAGCCTGTAGCAATACTGGAAGTTGGGAGAAAGCATTGGAGCTATATGAGGATCTTAAATCCCGTAAATTGGTACATGGTGTTTCAACAGTGAATGCTTTGATCACCGCACTGTGTGATGGGGATCAATTTCGCAAGGCTATGGAGGTTTTGTTTGAAATGAAAGAGTTGGGCCTATGCCCAAACTGCATCACATACTCAATACTTATAGTAGCAAGTGAGAAAAAGGACGATCTGGAAGCAGCTCAAATGCTCTTATCTCAAGCAAAAATGGATGGTGTTCCCCCTAATCTTGTCATGTGTAGATGTATAACCTGGATGTGCTTTAGGAGATATGAGAGGGCTTGCAATGTTGGTGAACCTGGTTTATCTTTTGACTCAAGACAAGAACATGTTAATAATAAATGGACGTCACTGGCCTTAATGGTGTATCGTGAGATGATTAGAGATAGTACAGTGCCTACTAGTGAAATTCTGTCACATATTTTTGGATGCCTGCGACTCCCTTATGATGCCTCTTTGAAAAATAATCTTATTGAGAACCTGGGAGTGAGTGCTGAAACTTCAAAACGCTCAAACCTCTGTTCATTGATCGATGGATTTGGTGAATACGATCCCCGTGCCTTTTCTCTACTTGAGGAAGCTGCTTCTCTTGGAATTGTTCCATTTGTATCTTTTAAAGTGAATCCTATTGTGGCGGATTTAAAGGAATTGCACAATTTTACCGCTGAGGTATACCTCTTAACTGTTTTGAAGGGTCTCAAGCATCGGCTTGCCGCAGGCACAAAGCTACCCAACTTAGTCATCTTATTGCCTGTAGAGAAAACAAAAGTTGCAACTTCCAAGGGGGAGAAACTAATTAACGTTTCAGGAAGGGTTGGCCAGGCAGTTGCAGCACTGTTGAGAAGGCTGAGAATACCATACCAGGGCAATGAATCGTTTGGAAAGATCAGAATTAGTGGAATAACTTTGAGAAAATGGCTTCAGCCAAAACTTGAGTCTCCTTTCGGATCTCCTTTCAGTGGAAAACCAGGTGACTTGAGCTTATCACAATCACGACTTGGCAAAGGTATCAGTCGTCAACAGCAAAACATTCGAACCGGCAATCTGTCCTTGGATTAA 3354 0.404 MEVSLTSNHYTLSLTSRSPSAFSLSNLRSIRTQFLGCSHSLGPPGGVRSRNNKCQKLRLLQLHSPRFIFKASLSSHSVVVVVVTLVTLSAVSLFYYNYIKRKKNAKEIPGQPKFALSQQGSNIGNQAIESQILCFQEFQGENLLKEIGILEDKSDKENHDFEGKEAQLTYWTSPIVQEESVVTDKLESPSDVLTSSFNTASSSNSSKVADESHLSMEFQSSSFEPLSFAAEMTELQVEETRDKAHSDSELPIIINKSEHTAFFDPVNNEFTIVKDHAKEKIELGAISSDVLIGESTRQELYMFYQFNMSSTGSMSQLNSLKSPPSHASFMKKKELQSTMGNNALKGPESLKEASLQISENIEGVESRASYKEGYPQQNGSHSLRKRNRPLSNRGKTNLDQKSNEFFPQNSDSIGEYVDKKNGHSQHLRTYNSLLKDERLHECVELLKDMEMKGILDMTKVYHAKFFNFCKTQKAVREAFDYIKLIPNPQLSTFNMLMSVCSSSQDSEGAFQVLQLVQGAGLKPDCKLYTTLISTCAKSGKVDQMFEVFHNMVNSGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKKLKPDRVVFNALIAACAKSGAVDRAFDVLAEMASELQPIEPDHITIGALMKACANAGQVERAQEVYKWLDQYSIKGTPEVYTIAINSCSQTGDWEFACRVYSDMIGKGVFPDEMFLSALIDFAGHAGKLDAAFEILQEARNRGINIGKISYSSLMGACSNTGSWEKALELYEDLKSRKLVHGVSTVNALITALCDGDQFRKAMEVLFEMKELGLCPNCITYSILIVASEKKDDLEAAQMLLSQAKMDGVPPNLVMCRCITWMCFRRYERACNVGEPGLSFDSRQEHVNNKWTSLALMVYREMIRDSTVPTSEILSHIFGCLRLPYDASLKNNLIENLGVSAETSKRSNLCSLIDGFGEYDPRAFSLLEEAASLGIVPFVSFKVNPIVADLKELHNFTAEVYLLTVLKGLKHRLAAGTKLPNLVILLPVEKTKVATSKGEKLINVSGRVGQAVAALLRRLRIPYQGNESFGKIRISGITLRKWLQPKLESPFGSPFSGKPGDLSLSQSRLGKGISRQQQNIRTGNLSLD 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1425 1117 Pfam PPR repeat 432 454 IPR002885 -
Lele46g1425 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Lele46g1425 1117 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 438 569 - -
Lele46g1425 1117 Pfam Pentacotripeptide-repeat region of PRORP 492 630 IPR033443 -
Lele46g1425 1117 Pfam Pentacotripeptide-repeat region of PRORP 639 779 IPR033443 -
Lele46g1425 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 736 770 IPR002885 -
Lele46g1425 1117 MobiDBLite consensus disorder prediction 366 421 - -
Lele46g1425 1117 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 624 715 - -
Lele46g1425 1117 FunFam Pentatricopeptide repeat-containing protein MRL1 chloroplastic 716 863 - -
Lele46g1425 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 593 IPR002885 -
Lele46g1425 1117 MobiDBLite consensus disorder prediction 371 385 - -
Lele46g1425 1117 Gene3D Tetratricopeptide repeat domain 744 862 IPR011990 GO:0005515
Lele46g1425 1117 Gene3D Tetratricopeptide repeat domain 418 626 IPR011990 GO:0005515
Lele46g1425 1117 TIGRFAM PPR: pentatricopeptide repeat domain 774 807 IPR002885 -
Lele46g1425 1117 TIGRFAM PPR: pentatricopeptide repeat domain 596 622 IPR002885 -
Lele46g1425 1117 TIGRFAM PPR: pentatricopeptide repeat domain 561 594 IPR002885 -
Lele46g1425 1117 TIGRFAM PPR: pentatricopeptide repeat domain 738 769 IPR002885 -
Lele46g1425 1117 TIGRFAM PPR: pentatricopeptide repeat domain 527 560 IPR002885 -
Lele46g1425 1117 TIGRFAM PPR: pentatricopeptide repeat domain 492 525 IPR002885 -
Lele46g1425 1117 TIGRFAM PPR: pentatricopeptide repeat domain 669 702 IPR002885 -
Lele46g1425 1117 MobiDBLite consensus disorder prediction 393 410 - -
Lele46g1425 1117 Gene3D Tetratricopeptide repeat domain 627 737 IPR011990 GO:0005515
Lele46g1425 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 666 700 IPR002885 -
Lele46g1425 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 594 624 IPR002885 -
Lele46g1425 1117 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 14 1116 - -
Lele46g1425 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Lele46g1425 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 771 805 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1425 Lele-ChrLele46 21076196 21086160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1425 455 841 Glycosyltransferase AT1G05670 26.478 7.45e-34 138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g1425 46 21076196 21086160 Lele47g0082 47 556190 566202 hybridization
Lele46g1425 46 21076196 21086160 Lele48g0086 48 1285329 1295331 hybridization