Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0085 ATGGAGAGTACTGGCTCAGGCACACCAAAGAAGAAAAGTGGTGAAAATGGACAGGTTCTGGACGGTTCGAATATTATGGAGTTAGTTGGAAACGATCAAGTTTTCAGCAATTTCGTGGACCATAAGTTTCAGGAGCTGGATAGGGACAGAGACGGGAAGCTCTCCGTCAAGGAGCTTGAGCCTGCCGTTGCTGATATCGGTGCCGCCCTAGGCTTGCCTGCTCAGGGAACTAATCCTGATTCCAATCACATTTATTCTGAGGTGTTGAATGAATTCACCCATGGCAAGCAAGAGAAAGTGAACAAGACTGAGTTCAAAGAGGTACTCTCCGACATTCTGTTGGGAATGGCTGCTGGGCTGAAGCGAGACCCAATACTGATTCTTCGTATAGATGGGGAAGATCTCCTTGAATTTGTTGGTGGATCAAGTTATGGAGCAGAAGTGTCTTCCATATTCTCCCAGATTGAATCTCCTGATGCTTCACTCCGTGAGCATATAACTGGAGCTCTGGGAAAACTCACAGTTGAGCATGGGATCCCTCCCACTTCAGATTCTTGGGTTTTTAATAACATTGTGGAACCGGCTCTACAATCTCAAGTTGGCCCGGATTGGGATAAACCTGCTTCTCAAGATACATTTTTGGTGGAGTTTAAGAAAGTAGCATCGGCTGTGGCTGATCATCTGAAGGAGCAACCTGTCATTGTTGCTCACAGTGAGAATACCTTCGATGGAAGCGGCATCAAGAGACTATTGTCCAACAAGTTTGAATTAGACAAGACCTTGAACTCAGCTTTAGAAAATATACCTAAAGATCGCAATGGAAAACTGTCAAAGGAATATCTTCGTGTGGCACTTGATGTGGTGTCTCCATCTGCTGGTTTGCCTCCAGTTGGTGCAATTGAAGAGATGGATAAGGTTATTGTTGAAGTGTTCAGGATGATAAATGCAGATGATGGGAAGGTGGTTCAAGAAGATGAATTCAAGAAAATATTAACTGAAATACTGGGGAGTATCATGTTGCAGTTAGAGGGAAATCCCATATCTGTTTCTTCAAATTCAGTTGTGCATGAGCCTCTAGGCTCTTCTTCACCGTTGCAGCCATCTTATAGTGAGACGGCGGCATAG 1125 0.4453 MESTGSGTPKKKSGENGQVLDGSNIMELVGNDQVFSNFVDHKFQELDRDRDGKLSVKELEPAVADIGAALGLPAQGTNPDSNHIYSEVLNEFTHGKQEKVNKTEFKEVLSDILLGMAAGLKRDPILILRIDGEDLLEFVGGSSYGAEVSSIFSQIESPDASLREHITGALGKLTVEHGIPPTSDSWVFNNIVEPALQSQVGPDWDKPASQDTFLVEFKKVASAVADHLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTLNSALENIPKDRNGKLSKEYLRVALDVVSPSAGLPPVGAIEEMDKVIVEVFRMINADDGKVVQEDEFKKILTEILGSIMLQLEGNPISVSSNSVVHEPLGSSSPLQPSYSETAA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0085 374 ProSiteProfiles EF-hand calcium-binding domain profile. 34 69 IPR002048 GO:0005509
Lele48g0085 374 ProSitePatterns EF-hand calcium-binding domain. 47 59 IPR018247 -
Lele48g0085 374 MobiDBLite consensus disorder prediction 1 21 - -
Lele48g0085 374 MobiDBLite consensus disorder prediction 355 374 - -
Lele48g0085 374 Gene3D - 15 120 - -
Lele48g0085 374 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 130 354 - -
Lele48g0085 374 MobiDBLite consensus disorder prediction 1 20 - -
Lele48g0085 374 SMART efh_1 260 288 IPR002048 GO:0005509
Lele48g0085 374 SMART efh_1 38 66 IPR002048 GO:0005509
Lele48g0085 374 SMART efh_1 306 334 IPR002048 GO:0005509
Lele48g0085 374 SUPERFAMILY EF-hand 42 345 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0085 Lele-ChrLele48 1275293 1278802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0085 18 372 EF-hand Containing Proteins AT4G38810 67.877 2.25e-174 488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1330 45 23048503 23051800 Lele48g0085 48 1275293 1278802 hybridization
Lele46g1426 46 21092279 21096156 Lele48g0085 48 1275293 1278802 hybridization