Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1330 ATGGAGAGTACTGGCTCAGGCACACCAAAGAAGAAAAGTGGTGGTGGAAATGGACAGGTTCTGGACGGTTCGAATATTATGCAGTTAGTTGGAAACGATCAAGTTTTCAGCAATTTCGTGGACCATAAGTTTCAGGAGCTGGATAGGGACAGGGACGGGAAGCTCTCAGTGAAGGAGCTTGAGCCTGCCGTTGCTGATATCGGTGCCGCCCTAGGCTTGCCCTCTCAGGGCACTAATCCTGATTCCGATCACATCTATTCTGAGGTGTTGAATGAATTCACCCATGGCAAGCAAGGGAAAGTGAACAAGACTGAGTTCAAAGAGGTACTCTCAGACATTCTGTTGGGAATGGCTGCTGGGCTGAAGCGAGACCCAATAGTGATACTTCGTATAGATGGAGAAGATCTCCTTGAATTTGTTGGTGGACCAAGTTATGAAGCAGAAATGGCTTCCATATTCTCCCAGATTGAGTCTCCTGATGCTTCACTCCGTGAGCATATAATGGGAGCTCTGGGAAAACTCACAGTTGAGCATGGAATCCCTCCCACTTCAGATTCTTGGGTTTTTAATAACCTTGTGGAACCGGCTCTACAATCTCAAGTTGGCCCGGATTGGGATAAACCTGCTTCTCAAGAGACATTTTTGGTGGAATTTAAGAAAGTAGCATCGGCTGTGGCTGATCGTCTGAAGGAGCAACCTGTCATTGTCGCTCATAGTGAGAACACCTTTGATGGAAGCGGCATCAAGAGACTATTGTCGAACAAGTTTGAATTAGACAAGACCTTGAACTCAGCTTTAGAAAGTATACCTAAAGATCGCAATGGAAAATTGTCAAAGGAATATCTTAGAGTGGCACTTGATGTTGTGTCTCCAGCTGCTGGTTTGCCTCCAGTTGGTGCAATTGAAGAGATGGATAAGGTTGTTGTTGAAGTGTTCAAGATGATAAATGCAGATGATGGGAAGGTGGTTAAAGAAGATGAGTTCAAGAAAATATTAACTGAAATACTGGGGAGTATCATGTTGCAGTTAGAGGGAAATCCCATATCTGTTTCTTCAAATTCAGTTGTGCATGAACCTCTAGGCTCTTCTTCACTGTTGCAGCCATCGTACAGCGAAACGGCAGCATAG 1128 0.4486 MESTGSGTPKKKSGGGNGQVLDGSNIMQLVGNDQVFSNFVDHKFQELDRDRDGKLSVKELEPAVADIGAALGLPSQGTNPDSDHIYSEVLNEFTHGKQGKVNKTEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFVGGPSYEAEMASIFSQIESPDASLREHIMGALGKLTVEHGIPPTSDSWVFNNLVEPALQSQVGPDWDKPASQETFLVEFKKVASAVADRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTLNSALESIPKDRNGKLSKEYLRVALDVVSPAAGLPPVGAIEEMDKVVVEVFKMINADDGKVVKEDEFKKILTEILGSIMLQLEGNPISVSSNSVVHEPLGSSSLLQPSYSETAA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1330 375 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 131 355 - -
Lele45g1330 375 Pfam EF-hand domain pair 43 109 IPR002048 GO:0005509
Lele45g1330 375 SMART efh_1 39 67 IPR002048 GO:0005509
Lele45g1330 375 SMART efh_1 307 335 IPR002048 GO:0005509
Lele45g1330 375 SMART efh_1 261 289 IPR002048 GO:0005509
Lele45g1330 375 Gene3D - 40 336 - -
Lele45g1330 375 MobiDBLite consensus disorder prediction 1 23 - -
Lele45g1330 375 SUPERFAMILY EF-hand 43 346 IPR011992 -
Lele45g1330 375 ProSitePatterns EF-hand calcium-binding domain. 48 60 IPR018247 -
Lele45g1330 375 ProSiteProfiles EF-hand calcium-binding domain profile. 35 70 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1330 Lele-ChrLele45 23048503 23051800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1330 19 373 EF-hand Containing Proteins AT4G38810 68.436 2.21e-178 498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1330 45 23048503 23051800 Lele47g0081 47 547059 550490 hybridization
Lele45g1330 45 23048503 23051800 Lele48g0085 48 1275293 1278802 hybridization