Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1426 ATGGAGAGTACTGGCTCAGGCACACCAAAGAAGAAAAGTGGTGAAAATGGACAGGTTCTTGACGGTTCGAATATTATGGAGTTAGTTGGAAACGATCAAGTTTTCAGCAATTTCGTGGATCATAAGTTTCAGGAGCTGGATAGGGACAGAGACGGGAAGCTCTCCGTGAAGGAGCTTGAGCCTGCCGTTGCTGATATCGGTGCCGCCCTAGGCTTGCCCGCTCAGGGCACTAATCCTGATTCCAATCACATCTATTCTGAGGTGTTGAATGAATTCACCCATGGCAAGCAAGAGAAAGTGAACAAGACTGAGTTCAAAGAGGTACTCTCAGACATTCTGTTGGGAATGGCTGCTGGGCTGAAGCGAGACCCAATAGTGATACTTCGTATAGATGGGGAAGATCTCCTTGAATTTGTTGGTGGACCAAGTTATGAAGAAGAAATGTCTTCCATATTCTCCCAGATTAAATCTTCTGATGATTCACTCCGCGAGCATATAACTGGAGCTCTGGGAAAACTCACAGTTGAGCATGGGATCCCTCCCACTTCAGATTCTTGGGTTTTTAATAACATTGTGGAACCGGCTCTACAATCTCAAGTTGGGTCGGATTGGGATAAACCTGCTTCTCAAGATACATTTTTGGTGGAGTTTAATAAAGTAGCATCGGCTGTGGCTGATCGTCTGAAGGAGCAACCTGTCATTGTTGCTCACAGTGAGAATACCTTTGATGGAAGCGGCATCAAGAGACTATTGTCCAACAAGTTTGAATTAGACAAGACCTTGAACTCAGCTTTAGAAAATATACCTCAAGATCGCAATGGAAAACTGTCAAAGGAATATCTTCGGGTGGCACTTGATGTGGTGTCTCCATCTGCTGGTTTGCCTCCAGTTGGTGCAATTGAAGAGATGGATAAGGTTATTGTTGAAGTGTTCAAGATGATAAATGCAGATGATGGGAAGGTGGTTAAAGAAGATGAATTCAAGAAAATATTAACTGAAATACTTGGGAGTATCATGTTGCAGTTAGAGGGAAATCCCATATCTATTTCTTCAAATTCAGTTGTGCATGAGCCTTTAGGCTCTTCTTCTTTACTGTTGCAGCCATCTTATAGTGAAACGGCGGCATAG 1128 0.4344 MESTGSGTPKKKSGENGQVLDGSNIMELVGNDQVFSNFVDHKFQELDRDRDGKLSVKELEPAVADIGAALGLPAQGTNPDSNHIYSEVLNEFTHGKQEKVNKTEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFVGGPSYEEEMSSIFSQIKSSDDSLREHITGALGKLTVEHGIPPTSDSWVFNNIVEPALQSQVGSDWDKPASQDTFLVEFNKVASAVADRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTLNSALENIPQDRNGKLSKEYLRVALDVVSPSAGLPPVGAIEEMDKVIVEVFKMINADDGKVVKEDEFKKILTEILGSIMLQLEGNPISISSNSVVHEPLGSSSLLLQPSYSETAA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1426 375 ProSiteProfiles EF-hand calcium-binding domain profile. 34 69 IPR002048 GO:0005509
Lele46g1426 375 ProSitePatterns EF-hand calcium-binding domain. 47 59 IPR018247 -
Lele46g1426 375 Gene3D - 36 337 - -
Lele46g1426 375 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 130 354 - -
Lele46g1426 375 MobiDBLite consensus disorder prediction 1 21 - -
Lele46g1426 375 SUPERFAMILY EF-hand 42 345 IPR011992 -
Lele46g1426 375 SMART efh_1 306 334 IPR002048 GO:0005509
Lele46g1426 375 SMART efh_1 38 66 IPR002048 GO:0005509
Lele46g1426 375 SMART efh_1 260 288 IPR002048 GO:0005509
Lele46g1426 375 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1426 Lele-ChrLele46 21092279 21096156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1426 18 371 EF-hand Containing Proteins AT4G38810 69.468 1.47e-177 496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g1426 46 21092279 21096156 Lele47g0081 47 547059 550490 hybridization
Lele46g1426 46 21092279 21096156 Lele48g0085 48 1275293 1278802 hybridization