Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0057 ATGGGTTTCTTCAGCACTATATTTGGAGTTCTTGGATTCGGAATTGGGATCCCAGTTGGTCTCGTTATTGGATATTTTCTCTTCATTTACGTTCAACCCAGCGATGTAGAGGATCCTGAGATTATTCCATTGACCAAGCAAGATGAAGACTCTTTGCAACGAATTCTTCCTGAGATTCCAATTTGGCTGAAAAATCCAGACTTTGATCGGGTTGATTGGTTAAACAAGTTTCTTGAATACATGTGGCCCTACCTTGACAAGGCTATTTGCAAGACTGCAAAGGGTATTGCAACACCCATAGTCGATGAGCAGATAAAAAATTATAAAATAGAGTCAGTTGAGTTTGAAAAGTTAACACTTGGGACCTTACCTCCAACTTTTCAAGGGATGAAAGTCTTTGAGACTGATGAGAAGGAGCTGATCATGGAGACTGGCTTAAAATGGGCGGCAAATCCCAATGTCATCGTTGCTGTTAAGGCATTTGGGTTGAAAGCAACCGTTCAGGTGGTAGACTTGCAAGTTTTTGTTTCCCCACGGATTACATTGAAACCTTTGGTTCCAACATTTCCTTGCTTTTGCAACATTTTTGTGTCTCTCATGGAGAAGCCACATGTTGACTTTGGGATAAAACTTGTAGGGGCTGATCTTATGTCCATTCCTGGCCTCTACAGGTTTGTTCAGGAGATTATCAGAGATCAAGTTGCAAATATGTACCTGTGGCCAAAAACCCTGGAAGTGCAAGTTTTAGATCCAATAAAAGCATTGAAGAGGCCCGTGGGAATTCTCAATGTAAAGGTTCTGAGAGCTATAAAGCTTAGAAAGAAAGATTTACTTGGTGCGTCAGACCCTTATGTAAAAGTAAAGCTCTCTGATGAAAGGATGCAATCAAAAAAGACTTCAGTGAAGCACAAATGCTTGAATCCGGAATGGAATGAAGAATTTAAACTTCTTGTTAAAGATCCTGAGAACCAGGTTTTAAGTCTTAAAGTTTATGACTGGGATAAGGTTGGGAAGCATGAAAAGATGGGTGTAAATATAGTCCCTGTAAAAGAAGTTCCCCCTGAAGAGGCTAAGGCTTTTACTCTTGATCTCTTGAAAAGCACGGATCCCAACGATGGCGAGAAAGAGAAGTCCCGGGGTCAGATTGTTGTAGAATTGACATATAAACCATTCAAAGAGGAGGACTTGCTCAAGGAAAACGGGGCTCACATAATACAAAACGTTCCTGAAGGTACTCCTCCTGGGGGAGGCCTGCTTGTGGTTATAGCCCACGAAGCTCAAGATGTTGAAGGAAAGTATCACACTAATCCTCAAGCTCGAATTCTTTTCAAAGGGGAGCAGAAAAGGACCAAGCATATAAAGAAGAACAGAGATCCAAGATGGGCTGAGGAGTTCCAATTTGTAGCCGTGGAACCTCCCACTAATGAGAAAATACACGTGGAAGTTGTTAGCACCTCGTCGCGCAACCTGTTGCATCCCAAGGAATATCTGGGTTATGTTGAGATCAGTCTGGCGGATGTGGTGAGCAACAAGAGGATTAATGAAAAGTATCACCTGATAGACTCCAAGAATGGTCGCATCCAAATAGAGTTGAAGTGGCCGTTTTCTGACTTTGTAGTCGTAAGCGGTCGACGCAGTTGGCACGGTGCAGGAACTTATGATGCCAAGACGAAGACTGGTGGACCTAATGGCTCTATAAGGAACGGGGAAGAGTATTCCCATGCTTCTAACAATGGCTTGAAGAAGGCTATTAACTTCTGCGAAAGCTCTGATTCTAGTTGA 1782 0.4254 MGFFSTIFGVLGFGIGIPVGLVIGYFLFIYVQPSDVEDPEIIPLTKQDEDSLQRILPEIPIWLKNPDFDRVDWLNKFLEYMWPYLDKAICKTAKGIATPIVDEQIKNYKIESVEFEKLTLGTLPPTFQGMKVFETDEKELIMETGLKWAANPNVIVAVKAFGLKATVQVVDLQVFVSPRITLKPLVPTFPCFCNIFVSLMEKPHVDFGIKLVGADLMSIPGLYRFVQEIIRDQVANMYLWPKTLEVQVLDPIKALKRPVGILNVKVLRAIKLRKKDLLGASDPYVKVKLSDERMQSKKTSVKHKCLNPEWNEEFKLLVKDPENQVLSLKVYDWDKVGKHEKMGVNIVPVKEVPPEEAKAFTLDLLKSTDPNDGEKEKSRGQIVVELTYKPFKEEDLLKENGAHIIQNVPEGTPPGGGLLVVIAHEAQDVEGKYHTNPQARILFKGEQKRTKHIKKNRDPRWAEEFQFVAVEPPTNEKIHVEVVSTSSRNLLHPKEYLGYVEISLADVVSNKRINEKYHLIDSKNGRIQIELKWPFSDFVVVSGRRSWHGAGTYDAKTKTGGPNGSIRNGEEYSHASNNGLKKAINFCESSDSS 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0057 593 PRINTS C2 domain signature 277 289 IPR000008 -
Lele48g0057 593 PRINTS C2 domain signature 304 317 IPR000008 -
Lele48g0057 593 PRINTS C2 domain signature 326 334 IPR000008 -
Lele48g0057 593 SUPERFAMILY Heme-dependent peroxidases 544 589 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lele48g0057 593 MobiDBLite consensus disorder prediction 558 574 - -
Lele48g0057 593 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Lele48g0057 593 MobiDBLite consensus disorder prediction 552 574 - -
Lele48g0057 593 FunFam Synaptotagmin-2 isoform A 255 409 - -
Lele48g0057 593 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 257 393 IPR035892 -
Lele48g0057 593 Gene3D C2 domain 418 536 IPR035892 -
Lele48g0057 593 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Lele48g0057 593 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 533 IPR045050 GO:0008289
Lele48g0057 593 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 417 533 IPR035892 -
Lele48g0057 593 Gene3D C2 domain 256 407 IPR035892 -
Lele48g0057 593 CDD C2 262 355 - -
Lele48g0057 593 PRINTS Plant ascorbate peroxidase signature 571 593 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lele48g0057 593 PRINTS Plant ascorbate peroxidase signature 557 567 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lele48g0057 593 PRINTS Plant ascorbate peroxidase signature 539 554 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lele48g0057 593 ProSiteProfiles C2 domain profile. 400 517 IPR000008 -
Lele48g0057 593 FunFam Extended synaptotagmin-2 418 535 - -
Lele48g0057 593 Pfam C2 domain 260 357 IPR000008 -
Lele48g0057 593 Pfam C2 domain 419 519 IPR000008 -
Lele48g0057 593 Gene3D - 539 592 - -
Lele48g0057 593 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Lele48g0057 593 SMART C2_3c 418 516 IPR000008 -
Lele48g0057 593 SMART C2_3c 261 361 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0057 Lele-ChrLele48 1098208 1104065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0057 255 515 Lipid Metabolism Gene Families AT3G61300 27.574 8.57e-11 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1359 45 23216111 23222919 Lele48g0057 48 1098208 1104065 hybridization
Lele46g1455 46 21290523 21294951 Lele48g0057 48 1098208 1104065 hybridization