Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1359 ATGAGGTTGCCACTGTGGGTGGTGGTGTTTGAGAGCACGACCACTTTGCAAAATGACGTTTTCTCTGATGTGCTTTTACCAGTGACGGACATTGAAGGATCTAAATGGTTTGTTGGTGGGGAAGTACTTGAGATGGGTTTCTTCAGCACTATATTTGGAGTTTTTGGATTCGGAATTGGGATTCCAGTTGGTATTGTTATTGGATATTTTCTCTTCATTTACGCTCAACCCAGCGATGTAGAGGATCCTGAGATTATTCCATTGACCAAGCAAGATGAAGACACTTTGCAACAAGTTCTTCATGAGATTCCAATTTGGCTGAAAAATCCAGACTTTGATCGGGTTGATTGGTTAAACAAGTTTCTTGAATACATGTGGCCCTACCTTGACAAGGCTATTTGCAAGACTGCAAAGGGTATTGCAACACCCATAATCGATGAGCAGATAAAAAATTATAAAATAGAGTCAATTGAGTTTGAAAAGTTAACACTTGGGACCTTACCTCCAACTTTTCAAGGGATGAAAGTCTTTGTGACTGATGAGAAGGAGCTGATCTTGGAGACTGGTTTAAAATGGGCTGCAAATCCTAATGTCATTGTTGCTGTTAAGGCATTTGGGTTGAAAGCAACCGTTCAGGGGGTAGACTTGCAAGTTTTTGTTTCGCCACGGATTACATTGAAACCTCTGGTTCCAACATTTCCTTGCTTTTGCAACATTCTTGTGTCTCTTATGGAGAAGCCACATGTTGACTTTGGGCTAAAATTTGTAGGGGCTGATCTTATGTCCATTCCTGGCCTCTACAGGTTTGTTCAGGAGATTATAAAAGATCAAGTTGCAAATTTGTACCTATGGCCAAAAGCCTTGGAAGTGCAAGTTTTAGACCAAATAAAAGCATTGAAGAGGCCTGTGGGAATTCTCAATGTAAAGGTTCTGAGAGCCATAAAGCTTAAAAAGAAAGATTTACTTGGCGCGTCTGACCCCTATGTAAAAGTAAAGCTCTCTGATGAAAGGATGCAATCAAAAAAGACTTCAGTGAAGCACAAATGCTTGAATCCAGAATGGAATGAAGAATTTAAACTTCTTGTCATAGATCCTGAGAACCAGATTTTAAGTCTTAAAGTGTATGACTGGGATAAGGTTGGGAAGCATGAGAAGATGGGTATAAATATAGTACCTGTAAAAGAAGTTCCCCCTGATGAGGTTAAGGTTTTTACTCTTGATCTGTTGAAAAGCATGGATCCTTACGATGGCGACAAAGAGAAGTCCCGGGGTCAGATTGTTGTAGAACTAACATATAAACCATTCAAAGAGGAGGACTTGCTCAAGGAAAACAGGGCTCACATAATACAAAATGTTCCTGAAGGTACTCCTCCTGGGGGAGGCCTGCTCGTTGTTATAGCCCACGAAGCTCAAGATGTTGAAGGGAAGTATCACACTAATCCTCAAGCTCGAATTCTTTTCAAAGGGGAGCAGAAAAGGACCAAGCATATAAAGAAGAACAGAGATCCAAGATGGGCTGAGGAGTTCCAATTTGTAGCAGTGGAACCTCCTACTAATGAGAAAATACACGTGGAGGTTGTAAGCACCTCGTCACGCAACCTGTTGCATCCCAAGGAATATCTGGGTTACGTTGAGATAAGTCTGGCGGATGTGGTGAGTAACAAGAGAATAAATGAGAAGTATCATCTGATAGACTCGAAGAATGGTCGCATCCAAATAGAGTTAAATTGGCAAGATGCAGGAACTTATGATGCCAAGACGAAGACTGGTGGACCTAATGGCTCTATAAGGAACGGGGAAGAGAATTCCCATGCTTCTAAGAATGGCTTGAAGAAGGCTATTAACTTCTGCGCAAGCACTGATTCTAGTTGA 1872 0.4135 MRLPLWVVVFESTTTLQNDVFSDVLLPVTDIEGSKWFVGGEVLEMGFFSTIFGVFGFGIGIPVGIVIGYFLFIYAQPSDVEDPEIIPLTKQDEDTLQQVLHEIPIWLKNPDFDRVDWLNKFLEYMWPYLDKAICKTAKGIATPIIDEQIKNYKIESIEFEKLTLGTLPPTFQGMKVFVTDEKELILETGLKWAANPNVIVAVKAFGLKATVQGVDLQVFVSPRITLKPLVPTFPCFCNILVSLMEKPHVDFGLKFVGADLMSIPGLYRFVQEIIKDQVANLYLWPKALEVQVLDQIKALKRPVGILNVKVLRAIKLKKKDLLGASDPYVKVKLSDERMQSKKTSVKHKCLNPEWNEEFKLLVIDPENQILSLKVYDWDKVGKHEKMGINIVPVKEVPPDEVKVFTLDLLKSMDPYDGDKEKSRGQIVVELTYKPFKEEDLLKENRAHIIQNVPEGTPPGGGLLVVIAHEAQDVEGKYHTNPQARILFKGEQKRTKHIKKNRDPRWAEEFQFVAVEPPTNEKIHVEVVSTSSRNLLHPKEYLGYVEISLADVVSNKRINEKYHLIDSKNGRIQIELNWQDAGTYDAKTKTGGPNGSIRNGEENSHASKNGLKKAINFCASTDSS 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1359 623 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 111 293 IPR031468 GO:0008289
Lele45g1359 623 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 45 577 IPR045050 GO:0008289
Lele45g1359 623 CDD C2 306 408 - -
Lele45g1359 623 Gene3D C2 domain 300 451 IPR035892 -
Lele45g1359 623 PRINTS C2 domain signature 348 361 IPR000008 -
Lele45g1359 623 PRINTS C2 domain signature 321 333 IPR000008 -
Lele45g1359 623 PRINTS C2 domain signature 370 378 IPR000008 -
Lele45g1359 623 ProSiteProfiles C2 domain profile. 284 406 IPR000008 -
Lele45g1359 623 SMART C2_3c 305 405 IPR000008 -
Lele45g1359 623 SMART C2_3c 462 560 IPR000008 -
Lele45g1359 623 MobiDBLite consensus disorder prediction 584 606 - -
Lele45g1359 623 MobiDBLite consensus disorder prediction 588 603 - -
Lele45g1359 623 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 461 579 IPR035892 -
Lele45g1359 623 Pfam C2 domain 304 400 IPR000008 -
Lele45g1359 623 Pfam C2 domain 463 563 IPR000008 -
Lele45g1359 623 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 111 290 IPR039010 -
Lele45g1359 623 FunFam Synaptotagmin-2 isoform A 299 453 - -
Lele45g1359 623 PRINTS Plant ascorbate peroxidase signature 569 584 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lele45g1359 623 PRINTS Plant ascorbate peroxidase signature 601 623 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lele45g1359 623 PRINTS Plant ascorbate peroxidase signature 587 597 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lele45g1359 623 FunFam Extended synaptotagmin-2 462 579 - -
Lele45g1359 623 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 301 437 IPR035892 -
Lele45g1359 623 CDD C2 463 564 - -
Lele45g1359 623 ProSiteProfiles C2 domain profile. 444 561 IPR000008 -
Lele45g1359 623 SUPERFAMILY Heme-dependent peroxidases 568 618 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lele45g1359 623 Gene3D C2 domain 462 580 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1359 Lele-ChrLele45 23216111 23222919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1359 299 559 Lipid Metabolism Gene Families AT3G61300 27.437 4.69e-11 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1359 45 23216111 23222919 Lele47g0053 47 387766 394223 hybridization
Lele45g1359 45 23216111 23222919 Lele48g0057 48 1098208 1104065 hybridization