Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1173 ATGTCTCAGGTAGTGGCCACGCGCTCCATTCACAGCTCTTTCCCTTGCCCGAACCCTGGATCTGCACAGCCCAGGGCTGAAAACTTTTTAAAGTCTTCCACTTTTGCTTTCAATGTCTTCTCACCTAAGAAGACTTCCAACCTTGGTTTTCGCAGAAGGTCTTGCCAGATCGTTGCAAGGAAAGCTGCTATTTCACCTACTGAAGTAGTTCCCGTATCACCCGAGGATGATTTGAAGATTGAGGAGCAGTTGCTTGTAATCCCGCAATTCGGTGACACTTCAGCTGGTATGTGGTCGAAGCCCACGTTTAGACGGAAGACGAAGATAGTTTGTACGATTGGCCCTTCTACTAATACTCGGGAAATGATCTGGAAGCTGGCTGAGGCTGGCATGAATGTTGCTCGCCTCAATATGTCTCATGGGGACCATGCTTCTCATCAGAAAGTTATTGACTTAGTTAAGGAGTATAATGCACAATCTAAGGATAATGTGATCTCGATTATGCTTGACACCAAGGCAAGTTTCAACTTTGACTATTTTCTTGTTTCTGAAAATTGCTACGGCCCTGAGGTTAGGAGTGGGGATTTGCCACAACCAATCACGTTGACGCCTGGTCAGGAATTCACTTTTACAATCCAGAGGGGTGTTGGAACTCCAGACTGTGTCAGTGTGAACTACGATGATTTTGTCAATGATGTGGAAGTTGGGGACATGATTCTTGTTGATGGTGGTATGATGTCACTGATGGTTAAATCAAAGACGGCTGATTCAGTGAAATGTGAAGTTGTTGATGGAGGAGAGCTCAAATCAAGGCGGCATTTGAATGTTCGAGGAAAAAGTGCAACACTGCCTTCCATTACTGAAAAGGACTGGGATGACATCAAATTTGGAGTAGATAACCAAGTTGACTTTTATGCTGTTTCCTTTGTTAAGGATGCTCAAGTGGTTCACGAATTGAAGAATTATTTAAAGAGCTGTGGTGCTGATATACATGTCATCGTGAAGATTGAAAGTGCAGACTCTATACCAAACTTGCACTCAATTATTACAGCTTCTGATGGGGCAATGGTTGCAAGAGGAGATCTTGGTGCTGAGCTTCCTATTGAGGAGGTTCCACTTTTGCAGGAAGAGATAATTAATATTTGTCGTAGCATGGGAAAGGCTGTTATTGTAGCAACTAATATGCTGGAAAGCATGATTGTACACCCTACACCAACCAGAGCAGAAGTATCAGATATTGCAATTGCTGTCCGTGAAGGTTCTGATGGAATTATGCTTTCTGGTGAAACTGCTCATGGAAAGTTCCCACTGAAAGCTGTGAAAGTAATGCACACAGTAGCTTTACGGACAGAAGCAACCATTCCGGGTGGTCAAATGCCACCTAATCTTGGCCAAGTGTTCAAGAACCACATGAGTGAGATGTTTGCATACCATGCGACAATGATGTCTAATACCCTTGGAACCTCTACTGTAGTCTTCACTAGATCAGGTTTTATGGCTATCCTACTGAGCCACTATCGACCTTCTGGCACCATATTTGCTTTTACTGATAATAAGAGGATACAACAGAGGCTGGCTTTGTATCAAGGGGTATGTCCTATATATATGGAATTTTCTGACGATGCGGAGGAGACTTTCACCAGAGCGCTAGGTTTACTCCAGAAGCAAGGAATGGTGAAGGAAGGAGAAGAAGTGGCCATTGTACAGAGTGGCAGGCAACCCATATGGAGGTCCCAGTCGACTCACAACATCCAGGTCCGGCAAGTTGTAGGATGTGGGATTGAATTTTGCTAG 1794 0.4415 MSQVVATRSIHSSFPCPNPGSAQPRAENFLKSSTFAFNVFSPKKTSNLGFRRRSCQIVARKAAISPTEVVPVSPEDDLKIEEQLLVIPQFGDTSAGMWSKPTFRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVISIMLDTKASFNFDYFLVSENCYGPEVRSGDLPQPITLTPGQEFTFTIQRGVGTPDCVSVNYDDFVNDVEVGDMILVDGGMMSLMVKSKTADSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNQVDFYAVSFVKDAQVVHELKNYLKSCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIINICRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDGIMLSGETAHGKFPLKAVKVMHTVALRTEATIPGGQMPPNLGQVFKNHMSEMFAYHATMMSNTLGTSTVVFTRSGFMAILLSHYRPSGTIFAFTDNKRIQQRLALYQGVCPIYMEFSDDAEETFTRALGLLQKQGMVKEGEEVAIVQSGRQPIWRSQSTHNIQVRQVVGCGIEFC 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1173 597 ProSitePatterns Pyruvate kinase active site signature. 330 342 IPR018209 GO:0004743|GO:0006096
Lele47g1173 597 SUPERFAMILY PK C-terminal domain-like 438 589 IPR036918 -
Lele47g1173 597 MobiDBLite consensus disorder prediction 1 23 - -
Lele47g1173 597 PANTHER PYRUVATE KINASE 96 567 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele47g1173 597 PRINTS Pyruvate kinase family signature 332 358 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele47g1173 597 PRINTS Pyruvate kinase family signature 384 408 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele47g1173 597 PRINTS Pyruvate kinase family signature 302 316 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele47g1173 597 PRINTS Pyruvate kinase family signature 178 194 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele47g1173 597 PRINTS Pyruvate kinase family signature 359 383 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele47g1173 597 PRINTS Pyruvate kinase family signature 409 427 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele47g1173 597 PRINTS Pyruvate kinase family signature 428 444 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele47g1173 597 Gene3D - 105 448 IPR040442 -
Lele47g1173 597 TIGRFAM pyruv_kin: pyruvate kinase 105 589 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele47g1173 597 FunFam Pyruvate kinase 285 450 - -
Lele47g1173 597 FunFam Pyruvate kinase 190 283 - -
Lele47g1173 597 Pfam Pyruvate kinase, barrel domain 105 455 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lele47g1173 597 SUPERFAMILY PK beta-barrel domain-like 189 280 IPR011037 -
Lele47g1173 597 Gene3D - 462 590 IPR036918 -
Lele47g1173 597 Gene3D - 189 284 IPR015806 GO:0004743|GO:0006096
Lele47g1173 597 FunFam Pyruvate kinase 451 570 - -
Lele47g1173 597 Pfam Pyruvate kinase, alpha/beta domain 477 570 IPR015795 -
Lele47g1173 597 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 98 454 IPR015813 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1173 Lele-ChrLele47 17194575 17199572 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele47g1173 47 17194575 17199572 Lele47g1173 47 17194575 17199572 ECH
Lele45g0124 45 1155135 1160079 Lele47g1173 47 17194575 17199572 hybridization
Lele46g0148 46 889400 894283 Lele47g1173 47 17194575 17199572 hybridization