Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1117 ATGAGCTTTGCGGCTTACAAGATGATGCACTGCCCAACGGGCATCGAGAATTGCGCTTCTGGGTTCATCACGCATTCTCGTGCCGACTTCGTACCTCAAATACCACCGATTCAGACCGATGACCTTGACTCGGAGTGGCCAGCGAGGCGCGAAATTGGTCCCATTCCTAACCTCATTGTTACTGCGGCGAATGTCCTGGAAGTGTACATTGTGAGGGTGCAAGAAGAAGTTAGCAGAGAACCGAAGGGTAATGTGGAATCCAAGCGTGGTGGTCTGATGGATGGCATTACTGGGGCCTCGCTTGAGCTTGCTTGTCATTACAGGTTGCATGGTAATGTCGAAACCATGGATGTATTGAGCATTGTAGTTGGTGAAGCTTCTAGAAAGAGAGATTCTATCATCTTAACTTTTAAAGATGCGAAAATTTCAGTTCTGGAATATGACGATTCTATTCATGAACTTCGAACAAGTTCTTTGCATTGTTTTGAGGGTCCGGAGTGGCTCCACTTAAAAAGGGGCAGAGAACAATTTGCAAGAGGCCCATTGGTAAAGGTTGATCCTCAAGGCAGGTGTGGCGGAGTTCTTGTCTATGATTTGCAAATGATTATACTTAAGGCTACTCAGGCTGGATCTGGTTTAGTTGTAGAGGACGATGCCTTGGGTTCTGGAGGTGCAGTTGCTGCTCGGATTGAGTCTTCGTATATGATGAGTCTACGAGACTTGGACATGAGACATGTAAAAGATTTTACATTTGTACATGGTTATATTGAACCTGTGATGGTGATACTACATGAAAGGGAGCTTACTTGGGCTGGGTCTGTCTCATGGAAGCATCACACTTGCATGATATCTGCACTGAGTATCAGTACAACTTTGAAGCAGCATCCACTCATATGGTCAGCTGCTAATCTTCCTCACGATGCCTACAAGCTTCTTGCAGTGCCATCACCAATAGGTGGTGTTCTTGTGTTTGGTGCTAATACTATTCATTACCACAGTCAGTCTGCTTCATGTGCATTGGCGTTGAATAGTTATGCTGTTTCACTTGATAGTAGTCAAGAGATGCCAAGATCTAGTTTTAATGTGGAGCTTGATGCTGCCTATGCAACTTGGTTGTTGAGTGATGTGGCCTTGCTGTCAACAAAAACTGGTGAATTGTTGCTGCTTACTCTTGTTTATGATGGAAGGGTCGTCCAGAGACTTGATCTTTCCAAATCAAAAGCTTCAGTTTTGTCATCCGGTATCACAACAATTGGGAATTCTTTGTTTTTCCTTGCTAGCCGATTGGGAGACAGTATGCTGGTGCAATTTTCTTGTGGAGCTGGGGTTTCAATGTTGTCATCCAACCTAAAGGAAGAGGTTGGTGATATAGAAGGTGATGCTCCTTCAGCAAAGCGACTACGCAGGTCCCCTTCTGATGCTTTGCAAGATATGGTTAGTGGTGAGGAGCTCTCCCTGTTTGGATCTACCCCAAATAAAACAGAATCGGCACAGAAAACCTTCTCATTTGCAGTGAGGGATTCGTTGATTAATGTTGGTCCTTTGAAAGACTTCTCATATGGTTTAAGGATAAATGCTGATGCAAATGCAACCGGAATTGCTAAACAAAGTAACTATGAACTGGTATGCTGTTCTGGTCATGGAAAGAATGGTTCGATCTGTGTTCTTCGGCAATCAGTTCGTCCAGAAGTGATAACCGAGGTTGAACTTCCTGGTTGCAAAGGAATCTGGACTGTTTATCATAAGAACACCCGCTCTCATAATGCTGATTCTTCTAAGTTGGCCGATGATGATGATGAGTATCATGCTTATCTTATCATAAGTTTGGAAGCTCGTACTATGATACTGGAAACAGCTGATCTTTTGAGCGAGGTTACTGAAAGTGTTGACTATTATGTTCAAGGAAAGACACTTGCTGCAGGGAACTTATTTGGAAGGCGTCGTGTAATTCAAGTTTATGAACGTGGTGCTCGCATTCTAGATGGGTCATTTATGACCCAAGATGTAAGCTTTGGAGCTTCAAATTCTGAATCCAGTTCTGGATCTGACAATGCTATTGTGTCATCTGTCTCTATTGCTGATCCATATGTATTACTCAGAATGAATGATGGAAGCATTCGACTTTTGGTTGGAGATCCTACCATCTGCTCTGTTTCTGTCACAACTCCTTCATTTGAAAACTCAAAAAATTCAGTATCTGCTTGCACACTTTACCATGATAAAGGACCTGAACCATGGCTAAGGAAGACAAGTACTGATGCATGGCTTTCTACTGGTGTTGGTGAGGCAATTGATGGCACTGATGGTGCAGTTCAAGATCATGGGGATGTTTATTGTGTTGTTTGTTATGAAAATGGTGCCCTTGAAATGTTTGATACCCCAAATTTCAGTTGTGTTTTTTCTGTGGAAAAATTTATGTCTGGAAAGAGCCACCTGGTTGATACTCTCATGATGGAGGCATCAAAAGATCCTCAAAAAGTTGGAGGTTCTGATGAAGTGACTAACCAAGGCAGGAAGGAAAATGTACAGAGTATGAAGGTTGTAGAGTTAGCTATGCAGAGATGGTCAGGGAAGTATAGCCGCCCATTTATTTTTGGGATCTTGAGTGATGGAACAATTCTTTGTTACCATGCTTACTTTTATGAAGGCTCAGATGGTACTTCCAAGGTGGAGGATTCAGCATTTGCACAACGACCTGTGGGCCTAAATGGAACTAATGCTTCTAGGCTTAGAAATTTGAGATTTGTTCGCGTCCCCTTAGATGTATATGCCAGGGAGGAGATATCAAGTGGATCCCCTTCTCAGAGAATTACTATTTTCAAGAATATAGGTGGTTACCAAGGATTTTTCTTGTCGGGGTCTAGACCCGCTTGGGTTATGGTGCTGAGAGAACGGCTTCGTGTTCATCCACAGCTATGCGATGGGTCTACTGTTGCTTTTACTGTCCTTCACAATGTGAACTGCAATCATGGTCTCATATATGTTACATCACAGGGTGTTTTAAAGATATGCCAACTGCCTTCTGGCTCAAGCTATGATAGCTACTGGCCTGTACAGAAAATTCCGTTAAAAGCTACTCCTCATCAAGTAACCTACTTTGCAGAGAAGAATTTATATCCGCTTATAGTCTCAGTTCCTGTTCTCAAGCCACTTAATCAAGTTGTTTCATCTTTGGGTGATCAAGAGGTCAACCAACAAACTGAGAATCAAAATCTGAGCTCTGATGAGCAAAACCGCTTTTACACTATTGATGAATTTGAGATCCGTATTATGGAGCCAGATAAATCTGGTGGCCCTTGGCAAACAAAAGCAACAATACCTATGCAAAGTTCTGAAAATGCCCTTACTGTGCGAATGGTTACACTGCTGAATACAGAAACAAAAGAGAATGAAACACTTTTAGGTATTGGCACTGCTTATGTGCAAGGAGAGGATGTTGCTGCAAGAGGGCGTGTCCTTCTGTTTTCTTTGGGGAAAAACACCGATAATAGTCAACCTCTGGTTTCAGAGGTCTACTCAAAAGAGTTGAAAGGTGCTATATCTGCTTTGGCCTCACTGCAAGGTCATCTATTAATAGCTTCTGGTCCAAAAATTATTCTGCACAAGTGGACTGGTAGTGAGCTGAATGGTATTGCATTTTTTGATGCTCCACCATTGCATGCTGTGAGCTTAAATATTGTCAAGAACTTTATACTTATTGGTGACATCCATAAAAGCATTTACTTCCTTAATTGGAAGGAGCAGGGTGCTCAACTTAGCTTATTAGCCAAGGACTTTGGTTCTCTTGATTGTTTTGCAACCGAGTTTTTGATTGATGGAAGCACTTTAAGTCTCATGGTTTCCGATGATCAAAAGAACATCCAGATTTTTTATTATGCACCAAAGATGTCTGAAAGCTGGAAGGGACAGAAGCTTCTTTCAAGGGCTGAATTTCATGTTGGAGCACACGTGACTAGATTCTTGCGTTTGCAGATGCTGTCTACTGCCTCTTCTGACCGGACTGGCACTGGTCCCGCCTCAGATAAAACAAATCGTTTTGCTTTATTATTTGGTACCCTGGATGGCAGTATTGGTTGCATTGCACCGCTAGATGAAATCACATTTCGGAGGCTGCAATCTTTGCAGAAAAAGCTTGTTGATGCTGTACCTCATGTTGCTGGCTTAAATCCAAAAGCTTTCAGACAGTTTCGTTCCAATGGAAAGGCTCATCGACCAGGCCCTGACAGTATAGTTGACTGTGAGCTGCTATGCCATTATGAACTGCTTCCATTGGAGGAACAGCTTGAAATTGCTCACCAGGTTGGAACAACTCGATCGCAAATTCTATCAAATCTGATTGACCTGTCTATTGGAACAAGCTTTTTGTGA 4368 0.4256 MSFAAYKMMHCPTGIENCASGFITHSRADFVPQIPPIQTDDLDSEWPARREIGPIPNLIVTAANVLEVYIVRVQEEVSREPKGNVESKRGGLMDGITGASLELACHYRLHGNVETMDVLSIVVGEASRKRDSIILTFKDAKISVLEYDDSIHELRTSSLHCFEGPEWLHLKRGREQFARGPLVKVDPQGRCGGVLVYDLQMIILKATQAGSGLVVEDDALGSGGAVAARIESSYMMSLRDLDMRHVKDFTFVHGYIEPVMVILHERELTWAGSVSWKHHTCMISALSISTTLKQHPLIWSAANLPHDAYKLLAVPSPIGGVLVFGANTIHYHSQSASCALALNSYAVSLDSSQEMPRSSFNVELDAAYATWLLSDVALLSTKTGELLLLTLVYDGRVVQRLDLSKSKASVLSSGITTIGNSLFFLASRLGDSMLVQFSCGAGVSMLSSNLKEEVGDIEGDAPSAKRLRRSPSDALQDMVSGEELSLFGSTPNKTESAQKTFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSICVLRQSVRPEVITEVELPGCKGIWTVYHKNTRSHNADSSKLADDDDEYHAYLIISLEARTMILETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARILDGSFMTQDVSFGASNSESSSGSDNAIVSSVSIADPYVLLRMNDGSIRLLVGDPTICSVSVTTPSFENSKNSVSACTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAVQDHGDVYCVVCYENGALEMFDTPNFSCVFSVEKFMSGKSHLVDTLMMEASKDPQKVGGSDEVTNQGRKENVQSMKVVELAMQRWSGKYSRPFIFGILSDGTILCYHAYFYEGSDGTSKVEDSAFAQRPVGLNGTNASRLRNLRFVRVPLDVYAREEISSGSPSQRITIFKNIGGYQGFFLSGSRPAWVMVLRERLRVHPQLCDGSTVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSGSSYDSYWPVQKIPLKATPHQVTYFAEKNLYPLIVSVPVLKPLNQVVSSLGDQEVNQQTENQNLSSDEQNRFYTIDEFEIRIMEPDKSGGPWQTKATIPMQSSENALTVRMVTLLNTETKENETLLGIGTAYVQGEDVAARGRVLLFSLGKNTDNSQPLVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGSELNGIAFFDAPPLHAVSLNIVKNFILIGDIHKSIYFLNWKEQGAQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTRFLRLQMLSTASSDRTGTGPASDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQKKLVDAVPHVAGLNPKAFRQFRSNGKAHRPGPDSIVDCELLCHYELLPLEEQLEIAHQVGTTRSQILSNLIDLSIGTSFL 1455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1117 1455 FunFam Cleavage and polyadenylation specificity factor subunit 1 53 446 - -
Lele47g1117 1455 Pfam CPSF A subunit region 1086 1420 IPR004871 GO:0003676|GO:0005634
Lele47g1117 1455 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 8 1440 - -
Lele47g1117 1455 FunFam cleavage and polyadenylation specificity factor subunit 1 974 1362 - -
Lele47g1117 1455 Gene3D - 975 1362 IPR015943 GO:0005515
Lele47g1117 1455 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 131 701 IPR018846 -
Lele47g1117 1455 Gene3D - 55 446 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1117 Lele-ChrLele47 16792824 16805147 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele47g1117 47 16792824 16805147 Lele47g1117 47 16792824 16805147 ECH
Lele45g0269 45 2181504 2193878 Lele47g1117 47 16792824 16805147 hybridization
Lele46g0292 46 1917901 1936736 Lele47g1117 47 16792824 16805147 hybridization