Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1101 ATGTCTCGGATATTCTCAAGATGGAAGAAGGTGAAAGAGATGGCGATGATTTCTTCTGCAGAGACTCAGTTCGCTGTCTCTGCAAGAAGTGGTCATAAATGGGCGAGGTTCAATTTCCGACTCAATCAGTTTTGCCCAATCTCGACTCACTTAAATTGTTTTCCCATCGCCACCCATAGACGACGAGAATCGTTCATCAACGTTCAGGAGCGGTACAAATGGGACCACGGCGGCTCCGGCGACACCCATAATCGGAATTCTCAGGCCCGAAAGATTCGAGTCGATGCTAATTGCCCCCGGTGCGCCAGGAACATGGATGTATTTTTCTCCAACCGCCATTTTCCCAATTCTACTTCTGATTCCAATTTGATTCCTCCGGCTCCTCTTCATGAAGGAGGAGGTTATCAAACTATGAATCTCTGCCCCAATTGTAAAACAGCTTATTTCTTCCGCCCTTTTGGAACTGCTCCTATCCAAGGTACATTTGTGGAGATTGGTAGGGTCATAGATGATAAAGTTAATAATACTAGTAATAAATTACAGAAGAAGATATCCAATGGCAAAGTCAAGGAGGACAGAGAAAGTAATAATAGTTATGGCAGTAACGGTGTAGCAGAAGATTATGCCCATAGAAGTAACAGCAATAATGGGCTTAGAGCGACCTTTTGGCATACCTTAAGATCCTATAGTGATGGAGATGGTGGAGAACCACCAGAAACTTGGTCTCCCCCACCCGGTTCTTCTAATGGGAATGGGATTGCTGTGCATACTCCTCCAGGCCCGCCTTTTGCACCTGGTGTTAATGTTGTTCGGGTTTCAGGGCCACGGGAGGGTGGAGGTGGGGGTAATGGAGAAAAGACAACATGGGGAGGGTCCAATTTGGGTAAGGATTTACCCACACCAAAGGAGATCTGCAAGGGTCTTGATAAGTTTGTTATTGGCCAGGACAGAGCCAAAAAGGTGCTTTCTGTAGCTGTGTATAATCACTATAAAAGAATACACCATGCCTCATTACAGAAAGGGTCAGGGCCAGATTCAACAAATCCAAAAACTCTAGATAATGACGATAATGTGGAGCTAGAAAAGAGTAATGTTCTCCTGATGGGTCCAACAGGTTCAGGGAAGACATTGCTGGCAAAAACTCTAGCACGATTTGTGAACGTTCCATTTGTCATTGCTGATGCAACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTGGAATCAATATTGTATAAACTACTTGTGGCAGCTGAGTTCAATGTTCAAGCCGCTCAACAAGGGATAGTTTACATTGACGAAGTTGACAAGATAACTAAGAAGGCTGAAAGCTTAAATATTAGTCGGGATGTTTCTGGCGAGGGTGTTCAGCAGGCACTACTGAAAATGTTGGAAGGAACAATAGTGAATGTCCCTGAAAAAGGTGCAAGGAAGCATCCACGGGGCGATAACATACAGATTGACACGAAGGATATTCTTTTTGTATGTGGTGGAGCATTCATTGATCTCGAGAAAACAATATCAGAGAGACGACAAGATTCTTCTATTGGTTTTGGAGCTCCAGTTCGTGCAAATATGAGAATCAATAGAGTAATAAATGTCGAAGTAACATCAGCTTTACTCGAGTCGGTGGAAAGTTCTGATCTTATTGCATATGGTCTCATACCTGAGTTTATTGGACGGTTTCCAATCTTAGTTAGTTTATCCGCCTTAACAGAAGATCAACTTGTGCAGGTCCTCACAGAACCAAAGAATGCTCTTGGTAAGCAGTACAAGAAATTAATTGGAATGAATAATGTTAAGCTTCATTTCATGGAGAAGGCACTGAGATTGATCTCACAGAAAGCAATGGCCAAGAACACTGGCGCCAGGGGTTTGAGAGCTATACTGGAAAACATCTTAACTGATGCCATGTTTGAGATTCCAGATGTTAAGACCGGAAGTAATCGGATTGATGCAATAGTCGTCGACGAGGAGTCAGTAGGATCAGTAGATGCCGCAGGACGTGGAGGCAAAATTCTTCGTGGACAGGGTGCTTTGGAGGCTTACCTTGCAAAGACCAAGGACTCAGTGGTCAACGGTGAGGTAGCTGAATCAGATGTACAAGAGGGGGAAACAGAGAGAGCCATGAGCATGTGA 2142 0.4402 MSRIFSRWKKVKEMAMISSAETQFAVSARSGHKWARFNFRLNQFCPISTHLNCFPIATHRRRESFINVQERYKWDHGGSGDTHNRNSQARKIRVDANCPRCARNMDVFFSNRHFPNSTSDSNLIPPAPLHEGGGYQTMNLCPNCKTAYFFRPFGTAPIQGTFVEIGRVIDDKVNNTSNKLQKKISNGKVKEDRESNNSYGSNGVAEDYAHRSNSNNGLRATFWHTLRSYSDGDGGEPPETWSPPPGSSNGNGIAVHTPPGPPFAPGVNVVRVSGPREGGGGGNGEKTTWGGSNLGKDLPTPKEICKGLDKFVIGQDRAKKVLSVAVYNHYKRIHHASLQKGSGPDSTNPKTLDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLVAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFVCGGAFIDLEKTISERRQDSSIGFGAPVRANMRINRVINVEVTSALLESVESSDLIAYGLIPEFIGRFPILVSLSALTEDQLVQVLTEPKNALGKQYKKLIGMNNVKLHFMEKALRLISQKAMAKNTGARGLRAILENILTDAMFEIPDVKTGSNRIDAIVVDEESVGSVDAAGRGGKILRGQGALEAYLAKTKDSVVNGEVAESDVQEGETERAMSM 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1101 713 MobiDBLite consensus disorder prediction 181 212 - -
Lele47g1101 713 MobiDBLite consensus disorder prediction 229 297 - -
Lele47g1101 713 CDD AAA 362 473 - -
Lele47g1101 713 MobiDBLite consensus disorder prediction 196 212 - -
Lele47g1101 713 Pfam C-terminal, D2-small domain, of ClpB protein 572 642 IPR019489 -
Lele47g1101 713 SMART ClpB_D2_small_2 572 663 IPR019489 -
Lele47g1101 713 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 292 570 - -
Lele47g1101 713 Pfam AAA domain (Cdc48 subfamily) 361 565 IPR003959 GO:0005524|GO:0016887
Lele47g1101 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 656 IPR027417 -
Lele47g1101 713 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 95 690 - -
Lele47g1101 713 Gene3D - 571 670 - -
Lele47g1101 713 SMART AAA_5 361 624 IPR003593 -
Lele47g1101 713 Gene3D - 292 570 IPR027417 -
Lele47g1101 713 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 571 670 - -
Lele47g1101 713 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 295 662 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1101 Lele-ChrLele47 16660185 16665339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1101 365 464 Miscellaneous Gene Families AT3G02450 36.634 7.31e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele47g1101 47 16660185 16665339 Lele47g1101 47 16660185 16665339 ECH
Lele45g0287 45 2319259 2324311 Lele47g1101 47 16660185 16665339 hybridization
Lele46g0310 46 2054966 2067700 Lele47g1101 47 16660185 16665339 hybridization