Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1000 ATGGAGCAATTCGAAGTACAACAATTATACGCAGACAAGGTGTTTACCAATGAAACTCTGGATGGCAAAATCATCGTAAAGACTCAGTCTGCAATTTCTCACAATGGAGTTCGTGTTACTATCAAAGGATCCGTCAACATGCAGGTTCGCGGAGGATCAGCTGGAGTTATTGAGTCGTACTATGGAGTTATTAAGCCAATCCCCATTGTGAAGAGGACCGTTGAAGTTGGTTCTTCTGGAAAGATTGGTCCAGGTACAACAGAGATACCATTCTCAGTGATTCTTAGACAGCCTGGCAAGGATTTAGAACGATTCTATGAGACTTTCCATGGTTCAAATATCAATATTCAGATTACCCAAGACACCCAAAGACCTGCTCTACTTCATGAATTAAAATCAGGTGGGTTTCGGGTGACTGGAAAAGTCTGTACTCAGTGCTCTCTATCGGATCCTATCAGTGGTGAGCTAACAATAGAAGCATCTGCAGTTCCAATTCAATCCATTGACCTTCACTTGTTTCGTGTTGAGTCCATTCTTGTTGGGGAGAAAATTGCAACTGAAACCACCCTGATTCAAATTACCCAGGCAAGAAACACTGAAAATGCACCGAGTATTTCAAATTAA 624 0.4167 MEQFEVQQLYADKVFTNETLDGKIIVKTQSAISHNGVRVTIKGSVNMQVRGGSAGVIESYYGVIKPIPIVKRTVEVGSSGKIGPGTTEIPFSVILRQPGKDLERFYETFHGSNINIQITQDTQRPALLHELKSGGFRVTGKVCTQCSLSDPISGELTIEASAVPIQSIDLHLFRVESILVGEKIATETTLIQITQARNTENAPSISN 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1000 207 Pfam Vacuolar protein sorting-associated protein 26 12 118 IPR028934 GO:0006886
Lele47g1000 207 Gene3D - 142 200 IPR014752 -
Lele47g1000 207 Gene3D - 4 125 IPR014752 -
Lele47g1000 207 PANTHER VACUOLAR PROTEIN SORTING 26 RELATED 3 117 IPR028934 GO:0006886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1000 Lele-ChrLele47 15940945 15943913 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele47g1000 47 15940945 15943913 Lele47g1000 47 15940945 15943913 ECH
Lele45g0404 45 3151166 3154742 Lele47g1000 47 15940945 15943913 hybridization
Lele46g0423 46 2853700 2868889 Lele47g1000 47 15940945 15943913 hybridization