Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0423 ATGACGCGTGTATACGGAACTGGAGTATACGACTTTCGTCGTCATAGAGTAGCTGAGTACCCGGTAGCTGAGAAAGTAGAGACCAAGCCTGGGGCTACCCTTCCGAGCACTATTACTCTTTCGGAGATTCAACGGGATCGACTTACTAAGATTGCTGAGGCTAATTGGTTGATAACTGGTGACCATGCTCGGCCCAAGAATCCTTTTGAACCGGAATTGGTTAAGAAAATTTATGAGACAGAGTTGCTGGTTAAGGAGGGTCATAAACCCGTTCCACTGCAGAGGGTTATGATTCTGGAGGTTAGTCAGTATTTGGAGAACTATTTGTGGCCTAATTTCGATCCAGAGACTGCTACTTTCGAGCACGTCATGTCCATGATACTCATGGTGAATGAGAAGTTCCGAGAGAATGTTGCAGCTTGGGTGTGCTTCCATGATCGGAAAGATATTTTCAAAGGATTTCTTGAGAAGGTTCTTAAGCTGAAGGAGGGAAGGGAACTATGTATAGCTGAGAAGACCAATTACTTAGTTTTCATGATAAACACCTTTCAGAGTTTGGAAGATGAGGTTGTCAGCATGACAGTCTTGACACTAGCAAGTTTGAAATCCTGAGCTTTGTCTGAATCCAAGTCTGATCAAGAAGTGGAAAAGGATGATGGTGACAATGAAGTCATTGATACCATGAATTTGGAGTCAGCTGATGATGCTTGTGTATTGTATTGTGAGAGATTTATAGAATTTCTTATTGACCTCTTGAGTCAATTGCCTACAAGGAGGTACCTGAGGCCTCTTGTGGCTGATGTAGCTGTTGTGGCCAAATGCCATTTGAGCACACTCTATAGGCATGAAAAGGGCAAACTTTTTGCTCAGTTGGTTGACTTATTACAGTTCTATGAAGGATTTGAAATTAATGATCATACAGGAACACAGTTAACAGATCATGAGGTTCTTGAATCTCATTACAGTCATCTCCAATCATTTCAGCTACTTGCATTTAAAAGGATTGAGAAGCTGCGAGAACTTGCATTGAGTAACATTGGTTCAATTCACAAGCGTGCAGATCTATCTAAGAAGCTATCTGTTCTTTCTCCTGAGGAGTTAAGGGATTTGGTTTGCTGCAAGCTTAAATTGGTCTCCCAAGAAGATCCTTGGTCACAGAGGGTTGATTTTCTTATTGAAGTGATGGTGTCGATCTTTGAGAAACAACAGTCACAAAAAGAAGCCATTAATTCTCTTCCACTATACCCAAATGAGCTGATTATGTGGGATGAAAGTGTCGTGCCAAGCATAAATTACACTGGAGAAGGTTGTTTGGCTCTGCCAAAGCTTAACTTACAGTTCTTAACACTGCATGATTATCTCCTTCGAAATTTTAATCTCTTTAGACTTGAATCAACATATGAAATACGTGAGGATATACAAGAGGCAGTTCCACATCTTCTTGCATATATTAATAATGAGGGAGAAACCGCTTTCCGTGGTTGGTCTAGAATGGCTGTACCAATCAAAGAGTTCAAGATCGCTGAGGTAAAGCAACCAAATATAGGAGAAGTCAAGCCATCTTCCGTGACCGCAAAAGTTACATATAGCATTTCTAGTTATAGGGCGCAGATAAGATCAGAATGGGATTCCCTCAAAGAACATGATGTTTTGTTTTTACTTTCTATTCGCCCGTCATTTGAGCCTCTTACTGCAGAAGAAGAAGTTAAAGCTAGTGTGCCACAGAGGCTTGGCCTTCAGTATGTTCGAGGATGTGAAATTATTGAGATTCATGATGAGGAAGGAACTCTTATGAATGATTTCACTGGAAAGATTAAACGTGATGAGTGGAAGCCACCAAAGGGGGAACTTAGAACCATAACTGTGGCTTTGGATACTGCACAATACTACATGGATGTCAACAACATTGCAGAGAATGGGGCAGACGATGTTTATGGTACATTTAATATATTGATGAGGAGGAAGCCCAAAGAAAACAATTTCAAAGCCATCTTAGACTCAATAAGAGATCTGATGAATGAGTACTGTATTGTTCCTAAGTGGCTGGAAAACATATTTCTTGGTTATGGGGATCCTTCGGCAGCACAATGGACTAATATGCCTGATCAGTTGGAAACAGTAGATTTCAAAGATACCTTTTTAGATGCTGATCACTTGATGGAAAGTTTTTCAGATTATGAGGTTGGTATGGTTTCTTTTGTCAATCCTGATGCCACGGAGAACTTGAATCCAAAGCCTCCTTTTCGGATCACACTTCCTCGAACCCTAAAAGGAAACAGTGGCACCCTTCCGGGAAATATAGTGTCTACCACTGATGTAGTGAGTGATGGCAATAGGCTTGATGCTAGTCATCTGAAAGAAAAATTAATCGTTGAGACATATACTCCTCCTGATCCAGGCCCTTATCCCCAAGATCAGCCAAAACAGAATTCAGTTAGATTCACACCCACGCAGGTTGGTGCAATTATCTCCGGCATTCAACCTGGTTTAACAATGGTTGTGGGTCCACCTGGTACTGGAAAGACTGATACCGCTGTGCAAATTCTAAATGTCCTATATCATAATTGTCCTTTACAAAGAACCTTAATAATTACTCATTCAAATCAGGCTTTGAATGACCTTTTTGAAAAGATAATGCAGAGGGATGTGCCTGCACGTTATCTTCTTAGACTTGGTCAAGGAGAACAAGAGCTAGCAACTGATCTTGATTTTAGTCGGCAAGGCCGTGTTAATGCAATGCTTGTCAGACGGTTAGAATTGCTGAGTCAAGTGGAAAAGTTGGCAAGATCTCTTCAATTGCCAGAGGATGTGGGTTATACTTGTGAAACTGCAGGTTACTTTTGGTTAATTCATGTATATTCACGCTGGGAGCAATTTCTTGCTGCCTGTGCTCAGAACAAGGATAAACCAAGCATTGTTCAAGATCGCTTCCCCTTCAAAGAATTCTTTTCTGACACACCAGTATTTACTGGTAAATCTTTTGAGGAAGACTTGAGGGCTGCTAAGGGGTGCTTTCGGCATCTGAAGACTATGTTCCAAGAACTTGAAGAGTGTCGAGCATTTGAATTACTGAAGTCAACAGCTGATAGGGCTAACTACTTAATGACCAAGCAGGCTAAGATTGTTGCCATGACTTGTACCCATGCAGCTTTAAAGAGGAAAGATTTCCTTCAGTTAGGTTTTAAGTATGACAACCTGTTAATGGAAGAAAGTGCCCAGATTTTAGAGATTGAGACTTTTATTCCAATGTTACTCCAGAGACAGGAAGATGGTCACGCACGGCTTAAACGCTGCATCCTGATTGGTGATCATCACCAGTTGCCTCCTGTTGTTAAGAATATGGCTTTCCAAAAGTATAGCCACATGGATCAAAGTTTATTTACAAGATTTGTCCGTTTGGGAATTCCTTACATTGAGCTAAATGCCCAGGGAAGAGCCAGGCCAACTATAGCTGAACTTTACAATTGGAGATACAGAGATTTGGGAGACCTTCCTTCTGTTAAGGAGGAAGCAATATTCCATAGGGCAAACGCTGGATTTTCCTATGACTATCAGTTAGTGGACGTTCCAGATTACCTGGGTAAGGGTGAGACAACGCCTTCTCCTTGGTTCTACCAAAATGAGGGAGAAGCTGAATATGTTGTCAGTGTCTACATATACATGCGTTTATTGGGATATCCAGCAAATAAGATATCAATTTTGACTACTTACAATGGTCAGAAACTTCTTATCCGTGATGTAATAAACAGAAGATGTGTTCCATACGACTTCATTGGTCCTCCTAGTAAGATTACTACTGTTGATAAGTTTCAAGGTCAGCAAAATGATTTTATATTGCTGTCTCTTGTGCGTACTCGATTTGTTGGTCACCTGCGAGATGTAAGAAGATTAGTGGTTGCCATGTCTCGTGCTCGACTTGGTTTATATGTGTTTTGCCGTCGTTCTCTCTTTGAACAATGCTACGAGCTGCAGCCTACATTTCAGCTGCTGCTCAAGAGACCTGACAGACTTGCCCTAAATTTGAATGAGATTGCATCATGTACTGAACGACATGTTGAAGATACTGGACCTATTCATCTCGTCAGTGGCATCGATGAGATGAGTAATATTATACAAGAACTGTACCAGTTTAGTCAAGCGGCACCTTCCTTGGATACAAACGAAGCGAAACATGAGCAGCACCAGAATCCGAATGGTCATGCAGAGGAGAGTAAGCCACTCGAAAATAACACGGAAGATGTTTCAATGACTGATGGGCATACAGCTGAAGATATACCACCTGAGAGTAACACGAAAGATGTTCCAATGAGCGATGGCCATTTAACTGAAGATGCACCACCCGAAAGCAACCCGGAGGATGCTAATATGGTCGACGAAGGCGATGGCAAAGTAGAGCTAGCAATTGGATCGGGGATCGCCGGTGTAAAGTTCTCTGTCGTCGTTGCTATGTCAGTTGAGCTCAAACTCTCACGTTCCAATCGTATCTATCGCCCTTCGGAAACTCTGGATGGCAAAATCATCGTAAAGAACCATTCTCCAATTTCTCACAATGGAGTTCGTGTTACTGTCAAAGGATCCGTCAACATGCAGGTTCGCGGAGGGTCAGCTGGGGTTATTGAGTCGTACTATGGAGTTATTAAGCCAATCCCCATTGTGAAGAGGACAGTTGAAGTTGGTTCTTCTGGAAAGATTGGTCCAGGTACAACAGAGATACCATTCTCAGTGAATCTGAGACAGCCCGTCAAGGATTTAGAAAGATTCTATGAGACTTTCCATGGTTCAAATATCAATATTCAGTATATGGTCACTGCAGATATAACTCGCGGATACTTGCATAAATCTTTATCAACCGCAATGGAATTCATTGTTGAAAGTGATAGAGTTGATCTGCTACAACGTCCAATTTCACCAGAAATGGTCATCTTCTACATTACCCAAGACACCCAAAGGCATGCTCTACTACATGAATTAAAGTCAGGTGGGTTTCGGGTGACTGGAAAAGTCTGTACTCAGTGCTCTTTATCCGATCCTATCAGTGGTGAGCTAACAGTAGAAGCATCCACGGTTCCAATTCAATCCATTGACCTTCACTTGTTTCGTGTTGAATCCATTCTTGTTGGGGAGAAAATTGCAACTGAAACCACCCTGATTCAAACTACCCAGATTGCAGATGGAGATATATGCCGTAATATGACTCTGCCTATCCATGTAATACTTCCCCGTCTCTTGACGTGTCCAACAATCTTAGCTGGGCCATTCTCAATTGAGTTCAAAATCTCCATTGTTATAAGCTTCAAGTCAGAGTTTTCTAAATCACAAACAAAGGTTGATCCTAGAACTCCAAGACTGTGGCTGGCAATGGAAACATTGCCACTTGAGTTAGCTCGGACAAAGTGA 5397 0.4171 MTRVYGTGVYDFRRHRVAEYPVAEKVETKPGATLPSTITLSEIQRDRLTKIAEANWLITGDHARPKNPFEPELVKKIYETELLVKEGHKPVPLQRVMILEVSQYLENYLWPNFDPETATFEHVMSMILMVNEKFRENVAAWVCFHDRKDIFKGFLEKVLKLKEGRELCIAEKTNYLVFMINTFQSLEDEVVSMTVLTLASLKSXALSESKSDQEVEKDDGDNEVIDTMNLESADDACVLYCERFIEFLIDLLSQLPTRRYLRPLVADVAVVAKCHLSTLYRHEKGKLFAQLVDLLQFYEGFEINDHTGTQLTDHEVLESHYSHLQSFQLLAFKRIEKLRELALSNIGSIHKRADLSKKLSVLSPEELRDLVCCKLKLVSQEDPWSQRVDFLIEVMVSIFEKQQSQKEAINSLPLYPNELIMWDESVVPSINYTGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLAYINNEGETAFRGWSRMAVPIKEFKIAEVKQPNIGEVKPSSVTAKVTYSISSYRAQIRSEWDSLKEHDVLFLLSIRPSFEPLTAEEEVKASVPQRLGLQYVRGCEIIEIHDEEGTLMNDFTGKIKRDEWKPPKGELRTITVALDTAQYYMDVNNIAENGADDVYGTFNILMRRKPKENNFKAILDSIRDLMNEYCIVPKWLENIFLGYGDPSAAQWTNMPDQLETVDFKDTFLDADHLMESFSDYEVGMVSFVNPDATENLNPKPPFRITLPRTLKGNSGTLPGNIVSTTDVVSDGNRLDASHLKEKLIVETYTPPDPGPYPQDQPKQNSVRFTPTQVGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPLQRTLIITHSNQALNDLFEKIMQRDVPARYLLRLGQGEQELATDLDFSRQGRVNAMLVRRLELLSQVEKLARSLQLPEDVGYTCETAGYFWLIHVYSRWEQFLAACAQNKDKPSIVQDRFPFKEFFSDTPVFTGKSFEEDLRAAKGCFRHLKTMFQELEECRAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLLQRQEDGHARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRARPTIAELYNWRYRDLGDLPSVKEEAIFHRANAGFSYDYQLVDVPDYLGKGETTPSPWFYQNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRRCVPYDFIGPPSKITTVDKFQGQQNDFILLSLVRTRFVGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFQLLLKRPDRLALNLNEIASCTERHVEDTGPIHLVSGIDEMSNIIQELYQFSQAAPSLDTNEAKHEQHQNPNGHAEESKPLENNTEDVSMTDGHTAEDIPPESNTKDVPMSDGHLTEDAPPESNPEDANMVDEGDGKVELAIGSGIAGVKFSVVVAMSVELKLSRSNRIYRPSETLDGKIIVKNHSPISHNGVRVTVKGSVNMQVRGGSAGVIESYYGVIKPIPIVKRTVEVGSSGKIGPGTTEIPFSVNLRQPVKDLERFYETFHGSNINIQYMVTADITRGYLHKSLSTAMEFIVESDRVDLLQRPISPEMVIFYITQDTQRHALLHELKSGGFRVTGKVCTQCSLSDPISGELTVEASTVPIQSIDLHLFRVESILVGEKIATETTLIQTTQIADGDICRNMTLPIHVILPRLLTCPTILAGPFSIEFKISIVISFKSEFSKSQTKVDPRTPRLWLAMETLPLELARTK 1798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0423 1798 SUPERFAMILY E set domains 1485 1651 IPR014756 -
Lele46g0423 1798 FunFam Down syndrome critical region protein 3 1483 1626 - -
Lele46g0423 1798 Gene3D - 1474 1626 IPR014752 -
Lele46g0423 1798 FunFam RNA helicase aquarius 999 1143 - -
Lele46g0423 1798 Pfam AAA domain 1122 1313 IPR041679 -
Lele46g0423 1798 CDD EEXXQc_AQR 809 1159 - -
Lele46g0423 1798 FunFam Vacuolar protein sorting-associated protein 26 1665 1772 - -
Lele46g0423 1798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 807 1376 IPR027417 -
Lele46g0423 1798 PANTHER DNA2/NAM7 HELICASE FAMILY 303 1372 IPR045055 -
Lele46g0423 1798 MobiDBLite consensus disorder prediction 1387 1409 - -
Lele46g0423 1798 Pfam Vacuolar protein sorting-associated protein 26 1489 1763 IPR028934 GO:0006886
Lele46g0423 1798 CDD SF1_C_Upf1 1147 1330 IPR041679 -
Lele46g0423 1798 Pfam AAA domain 827 1113 IPR041677 GO:0004386
Lele46g0423 1798 Gene3D - 766 1135 IPR027417 -
Lele46g0423 1798 MobiDBLite consensus disorder prediction 1381 1460 - -
Lele46g0423 1798 Pfam Intron-binding protein aquarius N-terminus 43 217 IPR032174 -
Lele46g0423 1798 Pfam Intron-binding protein aquarius N-terminus 228 814 IPR032174 -
Lele46g0423 1798 FunFam Pre-mRNA-splicing factor 1145 1337 - -
Lele46g0423 1798 Gene3D - 1668 1775 IPR014752 -
Lele46g0423 1798 Gene3D - 1145 1336 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0423 Lele-ChrLele46 2853700 2868889 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g0423 46 2853700 2868889 Lele46g0423 46 2853700 2868889 ECH
Lele46g0423 46 2853700 2868889 Lele47g1000 47 15940945 15943913 hybridization
Lele46g0423 46 2853700 2868889 Lele48g1065 48 15487549 15492572 hybridization