Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0141 ATGGAGGGAGCTGGAGGTGGCAGTGCTTCGGCTGCTGCACCTGTAAACCAGGGGGTGCAGGACTTTATGAGGCTCTTTCAATATTATCTGGATAAAACTACTCCTCATACTACGTATAGATGGATTGGGACTTTGGTTTTGGCATCAATATATGCTTTGAGGGTTTATTATGTCCAGGGATTCTACATTGTGTCTTATGGTCTGGGAATATATTTGCTGAATCTGTTGATTGGTTTTCTGTCCCCTTTGGTTGATCCGGAGATGGAACCTTCAGATGGACCTCTGCTGCCAACTAAAGGTTCTGATGAGTTCAAACCTTTCATTCGCCGTCTTCCTGAATTTAAGTTCTGGTATTCTTTCACAAAAGCTTTCTGCATAGCTTTTGTCATGACCTTCTTTTCTGTATTTGATGTCCCTGTCTTTTGGCCTATATTACTCTGTTACTGGATTGTTCTGTTTGTCCTTACCATGAAGCGCCAAATTGTACACATGATCAAATACAAATATGTCCCATTCAACATCGGAAAGCAGGTTGAAAGTATAGCGGTAAGAAGCCTTCTTCAAGTAGCATTGGATCTCGTGCAGAATGAAGCTAAGCTGTTGCATTCTCTGAAGGATACTCATTTACTGGATTGA 636 0.4167 MEGAGGGSASAAAPVNQGVQDFMRLFQYYLDKTTPHTTYRWIGTLVLASIYALRVYYVQGFYIVSYGLGIYLLNLLIGFLSPLVDPEMEPSDGPLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMKRQIVHMIKYKYVPFNIGKQVESIAVRSLLQVALDLVQNEAKLLHSLKDTHLLD 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0141 211 PIRSF AtER_Rer1p 1 186 IPR004932 GO:0016020
Lele47g0141 211 Pfam Rer1 family 20 177 IPR004932 GO:0016020
Lele47g0141 211 PANTHER PROTEIN RER1 9 178 IPR004932 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0141 Lele-ChrLele47 1001144 1003069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0141 1 177 Miscellaneous Gene Families AT2G21600 79.096 1.94e-105 300
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1269 45 22615330 22617218 Lele47g0141 47 1001144 1003069 hybridization
Lele46g1361 46 20631413 20633580 Lele47g0141 47 1001144 1003069 hybridization