Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0122 ATGTCCTCCGCATTGGAATTGTTAGCTGCTTCTCCTTACTGCCTATCAATTGAGAAAGTATTTGTTATAGGAGGTGGCCAGATATTTAGAGAGGCTCTAAATGCACCTGCATGTGAAGCTATCCACATTACTGAAATCGAGACAAATATCGACTGTGATACTTTCACGCCTCCAGTTGATTCCTTTGTATTTCAGCCATGGTACTCTTCCTTTCCTAGGGTGGAGAATAACATCCGCTATTGTTTTACCACATATGTACGAGTAAGGAGTTCTATATCAGAATCCCTGAGTCAGAATTCTGATCAAAATTGTGATACTAGATCAGATTCCTCGAAACCTGAGGTCAAGAACTTCTCTTTCCTCCCTAAAGTGATTTTTAGGAGACATGAGGAGAACATTTATCTCAATCTGGTCCAAGATATCATCTCTGAAGGCACTGCTAAGGATGATAGGACTGGGACTGGCACCTTCTCGAAATTTGGTTGCCAGATGAGGTTTAATTTGCGCAGAAGCTTTCCTCTTTTAACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATAAGTGGTTCAACAAATGCCAAGGTGCTACAGGAAAAAGGCGTCCATATATGGGATGGCAATGCATCCAGAGAATACCTTGATAGTGTTGGATTGGCAGAGAGGGAGGAGGGTGACTTGGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCCAAGTACACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGGCGGATTATTCTCTCAGCTTGGAATCCGGTAGATCTTAAATTGATGGCCCTTCCACCCTGCCACATGTTTGCACAGTTCTATGTAGCAAACAGGGAGTTATCTTGTCAAATGTATCAGCGATCCGCAGACATGGGCCTGGGTGTGCCCTTTAATATTGCATCTTATGCCCTCCTGACATGCATGATTGCTCATGTTTGTGAGCTTGTTCCTGGTGATTTTGTCTATGTTATTGGGGATGCTCATGTTTACAGCAATCACGTGAGACCTTTGCAGGAGCAGCTCCGGAACCTTCCTAAACCTTTTCCGATTTTGAAGATAAATCCAAAGAAGGATATAGATTCATTTGTGGCATCTGATTTCAAACTCATAGGCTATGATCCATACCAGAAGATAGAAATGAAGATGGCTGTGTAA 1242 0.4243 MSSALELLAASPYCLSIEKVFVIGGGQIFREALNAPACEAIHITEIETNIDCDTFTPPVDSFVFQPWYSSFPRVENNIRYCFTTYVRVRSSISESLSQNSDQNCDTRSDSSKPEVKNFSFLPKVIFRRHEENIYLNLVQDIISEGTAKDDRTGTGTFSKFGCQMRFNLRRSFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGVHIWDGNASREYLDSVGLAEREEGDLGPVYGFQWRHFGAKYTDMHADYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPVDLKLMALPPCHMFAQFYVANRELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCELVPGDFVYVIGDAHVYSNHVRPLQEQLRNLPKPFPILKINPKKDIDSFVASDFKLIGYDPYQKIEMKMAV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0122 413 Pfam Dihydrofolate reductase 18 87 IPR001796 GO:0004146|GO:0046654
Lele47g0122 413 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 122 413 IPR036926 -
Lele47g0122 413 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 1 87 IPR001796 GO:0004146|GO:0046654
Lele47g0122 413 PANTHER THYMIDYLATE SYNTHASE 1 91 413 IPR045097 GO:0016741
Lele47g0122 413 CDD TS_Pyrimidine_HMase 133 367 IPR023451 -
Lele47g0122 413 PIRSF DHFR-TS 1 413 IPR012262 GO:0004146|GO:0004799|GO:0006730
Lele47g0122 413 Hamap Thymidylate synthase [thyA]. 131 413 IPR000398 GO:0004799|GO:0006231
Lele47g0122 413 PRINTS Thymidylate synthase family signature 309 335 IPR000398 GO:0004799|GO:0006231
Lele47g0122 413 PRINTS Thymidylate synthase family signature 347 364 IPR000398 GO:0004799|GO:0006231
Lele47g0122 413 PRINTS Thymidylate synthase family signature 291 306 IPR000398 GO:0004799|GO:0006231
Lele47g0122 413 PRINTS Thymidylate synthase family signature 172 193 IPR000398 GO:0004799|GO:0006231
Lele47g0122 413 PRINTS Thymidylate synthase family signature 265 284 IPR000398 GO:0004799|GO:0006231
Lele47g0122 413 Pfam Thymidylate synthase 133 413 IPR023451 -
Lele47g0122 413 FunFam Possible thymidylate synthase 125 413 - -
Lele47g0122 413 Gene3D Dihydrofolate Reductase, subunit A 1 88 IPR024072 -
Lele47g0122 413 TIGRFAM thym_sym: thymidylate synthase 227 413 IPR000398 GO:0004799|GO:0006231
Lele47g0122 413 ProSitePatterns Thymidylate synthase active site. 276 304 IPR020940 GO:0004799|GO:0006231
Lele47g0122 413 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 103 413 IPR036926 -
Lele47g0122 413 SUPERFAMILY Dihydrofolate reductase-like 2 87 IPR024072 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0122 Lele-ChrLele47 904099 907366 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1285 45 22695065 22703683 Lele47g0122 47 904099 907366 hybridization
Lele46g1383 46 20719007 20722166 Lele47g0122 47 904099 907366 hybridization