Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0098 ATGGCGACCTTATTGGGAACGATTCTGAAGCACCCGGAAGAAATATACCCAATGTTGAAGCTGAAGATGGTGATAAGGAAAGCAGAGAAGGCGATTCCTGATCAGAAACCACATTGGGTTTTCTGCTACGCCATTCTTCACAAGGTCGCTCGAAGTTTTTCCCTCACCATTCAGAACCTTGATTCCCACCTTCGTGATTCTATACTCGTATTTTATTTGGTTCTGAGAGCCTTGGATACCGTTGGTGGTACCTTAGACTGTAAGATTCTTATGGAGCAATTTCATCATGTTAGAACTGCCTTCCTTGAGCTGAAAAGAAGTCATCAGGATGTTATTAGAGAAGTTACCAGACAGATGGGAGCTGGAATGGCAAAATTTATTTGCAAGGAGATAGAGACAATAGAAGATCTGAATGAGTATGCTCATTACGTAGCAGGGCTCGTAGGTTTAGGACTTTCTAAGCTCTTTTATGCTTCTGGTTCAGAGGATTTAGCTCCTGAATCCCTTTCCAATTCAATGGGTTTACTCCTTCAGAATGCAAATATCATTCGTGACTATTTGGAAGATATTAATGAGATACCAATGCCACGAATGTTTTGGCCCCGTCAGGTTTGGAGTAAATATGTCGACAAACTCGAGGACTTGAAGGACGAGAACAATTCCGAGAAGGCATTGCAATGTTTGAATGAAATGGTCACAAATGCTTTGGTTCACGTACAACAATGTCTCAAATACTTGTCTGCTTTGAGAGATCCTGCGATTTTCAGATTCTGTGCTGTTCCTCAGGTCGTGGCTATTGGGACCCTAGCTTTATGCTACAACAACATTGATGTTTTCAGAGTTGCTTTGAAATTAAGACGCGGTCTCACGGCTAAACTCATCCACCAAACAAGAACAATATCCGATGTCTATGATGCTTTTTTAGAGTTCATTTCCATTATGAAATCTAAGGTTGAGAAGGATGATCCTAATGCCTCAACTACGCTGAGCAGAATAGAAGCAATTCAGAAAATTTGCGAGCAGAATTCTATAACTCCAAAACGACAAAGGGAAAACTACAAGGTCAACAAAGAATTAGGATATCATTCACCCCAGGGGGTTGCTGTATATGTTGCCATATGCTTGGCATTTGCATATCTGTATTCCAGCGTGCTCAACATATACTTCAAATCCTGGGATCTTGATTTTGTATACTCTGAGAAAATGGGGAGTTTGGGTGCGATTTTGAGGCATCCCGACGACTTCTTCCCGCTTCTGAAGCTCAAAATGGCGGTTAGGCACGCAGAGAAGCAGATCCCTACAGAGCCACACTGGGGCTTCTGCTATAGCATGCTTCACAAGGTGTCTGGCAGTTTTGGTCTCTTCATTCAGCAGCTCGGAACCGAGCTTCGCGACGCTGTTTGCATATTTTATTTGGTCCTGCGAGCCCTTGATACTGTGGAGGACGATACTAGCATAGCTACAGATGTCAAGGTGCCAATGTTAATAGCTTTTCATAATCACTTATATGATCGTGATTGGCATATTTCTTGTGGGACAAAGGAGTGCAAAATCTTAATGGACCAGTTTCATCATGTTTTGACTGCATTTCTGGAACTTGGAAAGAACTATCAGGAAGCAATTGAGGATATTACCAAAAGGATGGGAGCTGGAATGGCCAAATTTATTTGCAAGGAGGTGGAATCGGTTGATGAATATGATGAATATTGTCACTATGTAGCAGGACTTGTTGGGCTCGGTTTATCCAAGCTTTTCCATGCCTCTGGTTTGGAGGATTTGGCTCCAGAATACCTCTCTAATTCAATGGGTTTGTTCCTTCAGAAAACAAATATTATCCAAGATTACCTGGAAGACATTAATGAGATCCCAAAGTCACGCATGTTTTGGCCTCGGCAGATCTGGAGTAAATATGTTAACAAACTTGAGGACTTGAAAGAAGAAGACAATTCTGTCAAGGCAGTGCAATGCCTCAACGAGATGGTCACCAATGCTTTGATGCATGTTGAAGATTGCTTACTATACATGTCTAACTTAAGAGACATGGCTATATTCCGTTTTTGTGCTATTCCTCAGATCATGGCCATTGGGACTTCTGCATTATACTACAACAACATTGAAGTCTTCAGAGGTGTAGTTAAAATGAGGCGTGGTCTAACTGCCAAGGTGATTGATCGGACAAAGACAATGTCAGATGTCTATGGTGCTTTCTTTGACTTTTCTTGTATGTTGGAGTCCAAGGTTGACAAAAATGATCCCCATGCAACAAAAACATTGAGCAGGGTGCAAGCTATACAAAAGGCTTGCAGAGAATCTGGTCTCCTAAGTAAAAGGAAATCATATATTTTGAAGAGCGAGCCTGGATATAACCCAGCCACGTTTCTAATACTTATTCTCGCACTGGCTCTCATGTTCGCATATCTCTCCGCCAACCGGGATAACTGA 2442 0.4193 MATLLGTILKHPEEIYPMLKLKMVIRKAEKAIPDQKPHWVFCYAILHKVARSFSLTIQNLDSHLRDSILVFYLVLRALDTVGGTLDCKILMEQFHHVRTAFLELKRSHQDVIREVTRQMGAGMAKFICKEIETIEDLNEYAHYVAGLVGLGLSKLFYASGSEDLAPESLSNSMGLLLQNANIIRDYLEDINEIPMPRMFWPRQVWSKYVDKLEDLKDENNSEKALQCLNEMVTNALVHVQQCLKYLSALRDPAIFRFCAVPQVVAIGTLALCYNNIDVFRVALKLRRGLTAKLIHQTRTISDVYDAFLEFISIMKSKVEKDDPNASTTLSRIEAIQKICEQNSITPKRQRENYKVNKELGYHSPQGVAVYVAICLAFAYLYSSVLNIYFKSWDLDFVYSEKMGSLGAILRHPDDFFPLLKLKMAVRHAEKQIPTEPHWGFCYSMLHKVSGSFGLFIQQLGTELRDAVCIFYLVLRALDTVEDDTSIATDVKVPMLIAFHNHLYDRDWHISCGTKECKILMDQFHHVLTAFLELGKNYQEAIEDITKRMGAGMAKFICKEVESVDEYDEYCHYVAGLVGLGLSKLFHASGLEDLAPEYLSNSMGLFLQKTNIIQDYLEDINEIPKSRMFWPRQIWSKYVNKLEDLKEEDNSVKAVQCLNEMVTNALMHVEDCLLYMSNLRDMAIFRFCAIPQIMAIGTSALYYNNIEVFRGVVKMRRGLTAKVIDRTKTMSDVYGAFFDFSCMLESKVDKNDPHATKTLSRVQAIQKACRESGLLSKRKSYILKSEPGYNPATFLILILALALMFAYLSANRDN 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0098 813 ProSitePatterns Squalene and phytoene synthases signature 1. 140 155 IPR019845 GO:0016765
Lele47g0098 813 Pfam Squalene/phytoene synthase 446 714 IPR002060 GO:0009058
Lele47g0098 813 Pfam Squalene/phytoene synthase 47 280 IPR002060 GO:0009058
Lele47g0098 813 Gene3D Farnesyl Diphosphate Synthase 37 85 IPR008949 -
Lele47g0098 813 Gene3D Farnesyl Diphosphate Synthase 435 771 IPR008949 -
Lele47g0098 813 CDD Trans_IPPS_HH 439 721 IPR033904 GO:0004311
Lele47g0098 813 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 5 81 IPR044844 GO:0004311
Lele47g0098 813 SUPERFAMILY Terpenoid synthases 438 767 IPR008949 -
Lele47g0098 813 SFLD Squalene/Phytoene Synthase Like 438 726 IPR002060 GO:0009058
Lele47g0098 813 Gene3D Farnesyl Diphosphate Synthase 86 339 IPR008949 -
Lele47g0098 813 SFLD Isoprenoid Synthase Type I 438 726 - -
Lele47g0098 813 TIGRFAM squal_synth: farnesyl-diphosphate farnesyltransferase 86 339 IPR006449 GO:0004310|GO:0008610
Lele47g0098 813 TIGRFAM squal_synth: farnesyl-diphosphate farnesyltransferase 437 768 IPR006449 GO:0004310|GO:0008610
Lele47g0098 813 FunFam Squalene synthase 84 339 - -
Lele47g0098 813 SUPERFAMILY Terpenoid synthases 41 339 IPR008949 -
Lele47g0098 813 CDD Trans_IPPS_HH 41 292 IPR033904 GO:0004311
Lele47g0098 813 ProSitePatterns Squalene and phytoene synthases signature 1. 569 584 IPR019845 GO:0016765
Lele47g0098 813 ProSitePatterns Squalene and phytoene synthases signature 2. 173 201 IPR019845 GO:0016765
Lele47g0098 813 FunFam Squalene synthase 1 435 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0098 Lele-ChrLele47 705164 723952 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1310 45 22876796 22882580 Lele47g0098 47 705164 723952 hybridization
Lele46g1410 46 20907573 20910738 Lele47g0098 47 705164 723952 hybridization