Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0082 ATGGAAGTTAGCCTCACTTCCAATCATTTTACTCTTAGCTTAAGCTCACGTTCTCATTCTGCTTTCTCTGTTTCCAATCTCCGATCCATCCGTACGCAATTCCTTGGTTCTTCTCGTAGTTTCAGGCCTCCCGGAACTGTTCGCTCTAGAAATAACAAATGCCAGAAGTTGCGGCTTCTTCAACTCCATTCTCCTCGTTTTATCTTCAAAGCATCTTTGAGTTCTCACTCTGTCGTCGTCTTCGTTACCTTAGTTACTTTATCTGCAGTTTCTCTGTTCTACTATAATTACATCAAGAGAAAGAAGAATCCCAAGGAGATACTGGGTCAGCCAAAATTTGCATTATCACAGCAAGGAAGTAATATTGGGAACCAGGCCATCGAAAGTCAGATTCTTTGCTTCCTGGAATTTCAAGGGGAGAACCTGCTAAAGGAAATTGGGATATTGGAGGATAAATCTGACATAGAAAACCATGATTTTGAGGGCAAAGAAGCTCAACTAACATATTGGACATCTCATATGGTGCAAGAAGAGGCTGTTGTGACTGAGAAATTAGAGTCACCTTCTGATGTTCTAAACTCTAGCGTTAACACTGCTTCATCTTCAAACAGTTCCAAGGTTGTAGATGAATCTCATTTGTTCATGGAATTCCAATCAAGTTCCTTTGAGCCTCTATGTTCTGCAGAGATGACTGAATTACAAGTGGAAGAAACAAGAGATAAAGCCCACTCTAATTCTGAGCCTATAATAATAAATAAATCTGAGCATACTGCTTCTTTTGATCCTGTAAACAATGAATTCAAAATAGTGAAAGATTATGCTAAAGAAAAAATTGAACTTGGTGCCATCAGCAGCGATGTCCTAATTGACGAATCCACTAGGCAAGAACTGTACATGTTTTATCAGGTCAACATGGCTTCAACAGGATCCATGTCACCATTGAATGGTTTAAAATCACCACCTTCTCATGCTTCTTTCATGAAGAAAAAAGAATTGCAATCCACAATGGGGAATAATTCTTTAAAAGGACCAGAATCATTAGAAGAGGTCTCTCTACAAATTTCAGAGAATGTTGAAGGAGTGGAACCAAGAGCTAGTTACAAAGAAGGCTATCCCCAGCAAAATGGAAGTCATTCCTTTAGGAAACGTAGCAGACCTCTGAGCAACAGGGGGAAAACCTATCTGAATCAGAAAAGTAACGAAGTTCTTCCCCAGAATTCTGACCCAATCGGGGAGCATGTTAACAAGAAAAATGGTCATTCTCAACATCTTAGAACATATAATTCTTTGCTAAAGGATGGAAGGTTACATGAATGTGTTGAATTGCTTAAAGACATGGAAATGAAGGGAATTTTAGATATGACTAAGGTTTATCATGCAAAGTTTTTTAACACCTGCAAGACACAAAAGGTTGTTAGAGAAGCTTTTGATTACGTTAAGCTTATTCCAAATCCACAATTGAGCACATTTAATATGCTTATGTCCGTGTGTTCAAGCTCTCAAGATTCAGAAGGGGCTTTCCAAGTTCTGAAGCTTGTTCAGGGGGCCGGATTCAAACCTGATTGCAAACTTTATACCACTTTGATATCAACATGTGCCAAGAGTGGTAAAGTTGATCAGATGTTTGAGGTATTTCACAATATGGTTAATTCTGGAGTTGAACCTAATCTTCATACTTATGGGGCACTTATTGATGGTTGTGCTAGAGCTGGGCAAGTTGCTAAAGCATTTGGTGCTTATGGGATAATGAGGTCTAAGAAATTGAAGCCAGATCGTGTTATATTCAATGCACTTATAGCTGCATGTGCTAAGTCAGGAGCAGTGGATCGTGCTTTTGATGTTTTAGCAGAAATGGATGCAGAATTGCAACCTATTGAACCAGATCACATAACTATCGGTGCATTAATGAAGGCATGTGCAAATGCTGGTCAGGTTGAACGAGCGCGAGAAGTGTACAAGTGGTTAAACCAATATAGTATAAAGGGAACACCGGAGGTCTACACTATTGCCATCAATTCTTGTAGCCAAACTGGAGATTGGGAATTTGCATGTAGGGTATACAGTGACATGATTGAGAAAGGGGTTTTCCCAGATGAGATGTTTCTGAGTGCACTAATAGATTTTGCCGGACATGCTGGAAAGCTAGATGCTGCCTTTGAAATCCTACAAGAAGCTCGTAACCGAGGAATAAATATTGGCAAAATATCATACAGCTCTTTGATGGGAGCCTGTAGCAATTCAATCCTTGCAGCTGCAATCAAGGTGTGCATATCCTTTTTCCTGGTTTTCTTTGCGGATGTTATCTTTGCAGTGGAAATTAAGATGCTTGGTTTTTCAGTTAGGGTTTCTTGTGATGGGGATCAATTTCACAAGGCTATGGGGGTTTTGTTTGAAATGAAAGAGTTGGGCCTATGCCCAAACAGCATCACATTCTCAATACTTATAGTAGCAAGTGAGAAAAAGGACGATCTGGAAGCAGCTCAAATGCTCCTATCTCAAGCAAAAATAGATGGTGTTTCCCCTAATCTTGTCATGGGTAGATGTATAACCTGGATGTGCTTGAGGAGATATGAGAGGGCTTGCGATGTCAGTGAACCTGGTTTATCTTTTGACTCAAGACAAGCACATGTTAATAATAAATGGACATCACTGGCCTTAATGGTGTATCGTGAGATGATTAGAGATGGTACAGTGCCTAGTAGTGAAATTCTGTCTCATACTTTTGGATGCCTGCAACTCCCTTATGATGCCTCTTTGAAAAATAATCTTATTGAGAACCTGGGAGTAAGTGCTGAAGCTTCAAAACGCTCAAACCTATGTTCATTGATCGATGGATTTGGTGAATATGATCCCCGTGCTTTTTCACTGCTTGAGTTTTGGTTTGACAGGGTTGGCCAGGCAGTTGCAGCACTGTTGAGAAGGCTGAGAATACCATACCAGGGCAATGAATCATTTGGAAAGATCAGAATTACTGGAGTAACTTTGAGAAAATGGCTTCAGCCAAAACTTGAATCTCCTTTTGGATCTCATTTCAGTGGAAAACCATGTGACTTTAGCTTATCACAGTCACTACTCGGCAAAGGTATCAGTCTCCAACAGCGAAACATTCGAACCGGCAATCTGTCTTTGGATTAA 3135 0.4006 MEVSLTSNHFTLSLSSRSHSAFSVSNLRSIRTQFLGSSRSFRPPGTVRSRNNKCQKLRLLQLHSPRFIFKASLSSHSVVVFVTLVTLSAVSLFYYNYIKRKKNPKEILGQPKFALSQQGSNIGNQAIESQILCFLEFQGENLLKEIGILEDKSDIENHDFEGKEAQLTYWTSHMVQEEAVVTEKLESPSDVLNSSVNTASSSNSSKVVDESHLFMEFQSSSFEPLCSAEMTELQVEETRDKAHSNSEPIIINKSEHTASFDPVNNEFKIVKDYAKEKIELGAISSDVLIDESTRQELYMFYQVNMASTGSMSPLNGLKSPPSHASFMKKKELQSTMGNNSLKGPESLEEVSLQISENVEGVEPRASYKEGYPQQNGSHSFRKRSRPLSNRGKTYLNQKSNEVLPQNSDPIGEHVNKKNGHSQHLRTYNSLLKDGRLHECVELLKDMEMKGILDMTKVYHAKFFNTCKTQKVVREAFDYVKLIPNPQLSTFNMLMSVCSSSQDSEGAFQVLKLVQGAGFKPDCKLYTTLISTCAKSGKVDQMFEVFHNMVNSGVEPNLHTYGALIDGCARAGQVAKAFGAYGIMRSKKLKPDRVIFNALIAACAKSGAVDRAFDVLAEMDAELQPIEPDHITIGALMKACANAGQVERAREVYKWLNQYSIKGTPEVYTIAINSCSQTGDWEFACRVYSDMIEKGVFPDEMFLSALIDFAGHAGKLDAAFEILQEARNRGINIGKISYSSLMGACSNSILAAAIKVCISFFLVFFADVIFAVEIKMLGFSVRVSCDGDQFHKAMGVLFEMKELGLCPNSITFSILIVASEKKDDLEAAQMLLSQAKIDGVSPNLVMGRCITWMCLRRYERACDVSEPGLSFDSRQAHVNNKWTSLALMVYREMIRDGTVPSSEILSHTFGCLQLPYDASLKNNLIENLGVSAEASKRSNLCSLIDGFGEYDPRAFSLLEFWFDRVGQAVAALLRRLRIPYQGNESFGKIRITGVTLRKWLQPKLESPFGSHFSGKPCDFSLSQSLLGKGISLQQRNIRTGNLSLD 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0082 1044 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic 435 566 - -
Lele47g0082 1044 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 663 697 IPR002885 -
Lele47g0082 1044 Pfam Pentacotripeptide-repeat region of PRORP 489 626 IPR033443 -
Lele47g0082 1044 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 556 590 IPR002885 -
Lele47g0082 1044 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 520 IPR002885 -
Lele47g0082 1044 Gene3D Tetratricopeptide repeat domain 463 622 IPR011990 GO:0005515
Lele47g0082 1044 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 521 555 IPR002885 -
Lele47g0082 1044 Gene3D Tetratricopeptide repeat domain 771 864 IPR011990 GO:0005515
Lele47g0082 1044 TIGRFAM PPR: pentatricopeptide repeat domain 489 522 IPR002885 -
Lele47g0082 1044 TIGRFAM PPR: pentatricopeptide repeat domain 524 556 IPR002885 -
Lele47g0082 1044 TIGRFAM PPR: pentatricopeptide repeat domain 666 699 IPR002885 -
Lele47g0082 1044 TIGRFAM PPR: pentatricopeptide repeat domain 558 591 IPR002885 -
Lele47g0082 1044 TIGRFAM PPR: pentatricopeptide repeat domain 593 619 IPR002885 -
Lele47g0082 1044 MobiDBLite consensus disorder prediction 361 390 - -
Lele47g0082 1044 Pfam PPR repeat 428 451 IPR002885 -
Lele47g0082 1044 Pfam PPR repeat 666 695 IPR002885 -
Lele47g0082 1044 Pfam PPR repeat 633 653 IPR002885 -
Lele47g0082 1044 Gene3D Tetratricopeptide repeat domain 623 756 IPR011990 GO:0005515
Lele47g0082 1044 FunFam Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 621 712 - -
Lele47g0082 1044 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 591 621 IPR002885 -
Lele47g0082 1044 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 962 1043 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0082 Lele-ChrLele47 556190 566202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0082 427 842 Glycosyltransferase AT1G05670 25.412 7.01e-30 125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1329 45 23030096 23039790 Lele47g0082 47 556190 566202 hybridization
Lele46g1425 46 21076196 21086160 Lele47g0082 47 556190 566202 hybridization