Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0081 ATGGAGAGTACTGGCTCAGGCACACCAAAGAAGAAAAGTGGTGGAAATGGACAGGTTCTGGACGGTTCGAATATTATGGAGTTAGTTGGAAACGTACAAGTTTTCAGCAATTTCGTGGACCATAAGTTTCAGGAGCTGGATAGGGACAGAGACGGGAAGCTCTCCGTGAAGGAGCTTGAGCCTGCCGTTGCTGATATCGGTGCCGCCCTAGGCTTGCCCGCTCAGGGCACTAATCCTGATTCCGATCACATCTATTCTGAGGTGTTGAATGAATTCACCCATGGCAAGCAAGGGAAAGTGAACAAGACTGAGTTCAAAGAGGTGCTCTCAGACATTCTGTTGGGAATGGCTGCTGGGCTGAAGCGAGACCCAATAGTAATACTTCGTATAGATGGAGAAGATCTCCTTGAATTTGTTGGTGGACCAAGTTATGAAGCAGAAATGGCTACCATATTCTCCCAGATTGAGTCTCCTGATGCTTCACTCCGTGAGCATATAATGGGAGCTCTGGGAAAACTCACAGTTGAGCATGGAATCCCTCCCACTTCCGATTCTTGGGTTTTTAATAACCTTGTGGAATCGGCTCTGCAATCTCAAGTTGGCCCGGATTGGGATAAACCTGCTTCTCAAGAGACATTTTTGGTGGAATTTAAGAAAGTAGCATCGGCTGTGGCTGATCGTCTGAAGGAGCAACCTGTCATTGTCGCTCATAGTGAGAACACCTTTGAGGGAAGCGGCATCAAGAGACTATTGTCGAACAAGTTTGAATTAGACAAGACCTTGAACTCAGCTTTAGAAAGTATACCTAAAGATCGCAATGGAAAACTGTCAAAGGAATATCTTCGAGTGGCACTTGATGTTGTGTCTCCAGCTGCTGGTTTGCCTCCAGTTGGTGCAATTGAAGAGATGGATAAGGTCGTTGTTGAAGTGTTCAAAATGATAAATGCAGATGATGGGAAGGTGGTTAAAGAAGATGAATTCAAGAAAATATTAACTGAAATACTGGGGAGTATCATGTTGCAGTTAGAGGGAAATCCCATATCTGTTTCTTCAAATTCAGTTGTGCATGAGCCTCTAGGCTCTTCTTCACTGTTGCAGCCATCGTAG 1107 0.4508 MESTGSGTPKKKSGGNGQVLDGSNIMELVGNVQVFSNFVDHKFQELDRDRDGKLSVKELEPAVADIGAALGLPAQGTNPDSDHIYSEVLNEFTHGKQGKVNKTEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFVGGPSYEAEMATIFSQIESPDASLREHIMGALGKLTVEHGIPPTSDSWVFNNLVESALQSQVGPDWDKPASQETFLVEFKKVASAVADRLKEQPVIVAHSENTFEGSGIKRLLSNKFELDKTLNSALESIPKDRNGKLSKEYLRVALDVVSPAAGLPPVGAIEEMDKVVVEVFKMINADDGKVVKEDEFKKILTEILGSIMLQLEGNPISVSSNSVVHEPLGSSSLLQPS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0081 368 ProSiteProfiles EF-hand calcium-binding domain profile. 34 69 IPR002048 GO:0005509
Lele47g0081 368 Pfam EF-hand domain pair 42 108 IPR002048 GO:0005509
Lele47g0081 368 ProSitePatterns EF-hand calcium-binding domain. 47 59 IPR018247 -
Lele47g0081 368 Gene3D - 39 338 - -
Lele47g0081 368 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 130 354 - -
Lele47g0081 368 SMART efh_1 38 66 IPR002048 GO:0005509
Lele47g0081 368 SMART efh_1 306 334 IPR002048 GO:0005509
Lele47g0081 368 SMART efh_1 260 288 IPR002048 GO:0005509
Lele47g0081 368 SUPERFAMILY EF-hand 42 345 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0081 Lele-ChrLele47 547059 550490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0081 18 365 EF-hand Containing Proteins AT4G38810 69.231 5.95e-176 492
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1330 45 23048503 23051800 Lele47g0081 47 547059 550490 hybridization
Lele46g1426 46 21092279 21096156 Lele47g0081 47 547059 550490 hybridization