Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0053 ATGATTGCTGTCACATTTTTAGAATATGAAATTATCATTACTGTAGCCACGACCACTTTGCAAAATGACGTTTTCTCTGATGTGCTTTTACCAGTGACGGACATTGAAGGATCTAACAGGTTTGTTGGTGGGGAAGTACTTGAGATGGGTTTCTTCAGCACTATATTTGGAGTTTTTGGCTTCGGAATTGGGATTCCAGTTGGTATTGTTGTTGGATATTTTCTCTTCATTTACGTTCAACCCAGAGATGTAGAGGATCCTGAGATTATTCCATTGACCAAGCAAGATGAAGACACTTTGCAACAAGTTCTTCCTGAGATTCCAATTTGGCTGAAAAATCCAGACTTTGATCGGGTTGATTGGTTAAACAAGTTTCTTGAATACGTGTGGCCCTACCTTGACAAGGCTATTTGCAAGACTGCAAAGGGGATGAAAGTCTTTGTAACTGATGAGAAGGAGCTGATCTTGGAGACTGGTTTAAAATGGGCGGCAAATCCTAATGTTATTGTTGCTGTTAAGGCATTTGGGTTGAAAGCAACCGTTCAGGTGGTAGACTTGCAAGTTTTTGTTTCGCCACGGATTACATTGAAACCTCTGGTTCCAACATTTCCTTGCTTTTGTACCATTCTTGTGTCTCTTGTGGAGAAGCCACATGTTGACTTTGGGCTAAAACTTGTAGGGGCTGATCTTATGTCCATTCCTGGCCTCTACAGGTTTGTTCAGGTACAAATGTACGATATCATATCTTTTGAGATTATCAAAGATCAAGTCGCAAATTTGTACCTATGGCCAAAAACCTTGGAAGTGCAAGTTTTAGACCCAATAAAAGCATTGAAGAGGCCTTTGGGAATTCTCAATGTAAAGGTTCTGAGAGCCATAAAGCTTAAAAAGAAAGATTTACTTGGCGCGTCTGACCCCTATGTAAAAGTAAAGCTCTCTGATGAAAGGATGCAATCAAAAAAGACTTCAGTGAAGCACAAATGCTTGAATCCAGAATGGAATGAAGAATTTAAACTTCTTGTCAAAGATCCTGAGAACCAGGTTTTAAGTCTTAAAGTTTATGACTGGGATAAGGTTGGGAAGCATGAGAAGATGGGTGTAAATATAGTACCTGTAAAAGAAGTTCCCCCTGATGAGGTTAAGGTTTTTACTCTTGATCTGTTGAAAAACATGGATCGTTACGATGGCGACAAAGAGAAGTCCCGGGGTCAGATTGTTGTAGAACTAACATATAAACCATTCAAAGAGGAGGACTTTTTCAAGGAAAACGGGGCTTACATAATTCAAAATGTTCCTGAAGGTACTCCTCCTGGGGGAGGCCTGCTCGTGGTTATAGCCCATGAAGCTCAAGATGTTGAAGGGAAGTATCACGCTAATCCTCAATCTCGAATTCTTTTCAAAGGGGAGCAGAAAAGGACCAAGCATATAAAGAAGAACAGAGATCCAAGATGGGCTGAGGAGTTCCAATTTGTAGCAGTGGAACCTCCTACTAATGAGAAAATACACGTGGAGGTTGAATATCTGGGTTACGTTGAGACAAGTCTGGCGGATGTGGTGAGTAACAAGAGAATAAATGAGAAGTATCATCTGATAGACTCGAAGAATGGTCGCATCCAAGTGGTCGTAAACGGTCAACGCAGTTGGCAAGATGCAGGAACTTATGATGCCAAGACGAAGACTGGTGGACCTAATGGCTCTATAAGGAACGGGGAAGAGTATTCCCATGCTTCTAACAATGGCTTGAAGAAGGCTATTAACTTCTGCGCAAGCACTGATTCTAGTTGA 1785 0.4118 MIAVTFLEYEIIITVATTTLQNDVFSDVLLPVTDIEGSNRFVGGEVLEMGFFSTIFGVFGFGIGIPVGIVVGYFLFIYVQPRDVEDPEIIPLTKQDEDTLQQVLPEIPIWLKNPDFDRVDWLNKFLEYVWPYLDKAICKTAKGMKVFVTDEKELILETGLKWAANPNVIVAVKAFGLKATVQVVDLQVFVSPRITLKPLVPTFPCFCTILVSLVEKPHVDFGLKLVGADLMSIPGLYRFVQVQMYDIISFEIIKDQVANLYLWPKTLEVQVLDPIKALKRPLGILNVKVLRAIKLKKKDLLGASDPYVKVKLSDERMQSKKTSVKHKCLNPEWNEEFKLLVKDPENQVLSLKVYDWDKVGKHEKMGVNIVPVKEVPPDEVKVFTLDLLKNMDRYDGDKEKSRGQIVVELTYKPFKEEDFFKENGAYIIQNVPEGTPPGGGLLVVIAHEAQDVEGKYHANPQSRILFKGEQKRTKHIKKNRDPRWAEEFQFVAVEPPTNEKIHVEVEYLGYVETSLADVVSNKRINEKYHLIDSKNGRIQVVVNGQRSWQDAGTYDAKTKTGGPNGSIRNGEEYSHASNNGLKKAINFCASTDSS 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0053 594 ProSiteProfiles C2 domain profile. 263 385 IPR000008 -
Lele47g0053 594 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 49 143 IPR045050 GO:0008289
Lele47g0053 594 CDD C2 285 387 - -
Lele47g0053 594 Gene3D C2 domain 279 425 IPR035892 -
Lele47g0053 594 PRINTS C2 domain signature 349 357 IPR000008 -
Lele47g0053 594 PRINTS C2 domain signature 300 312 IPR000008 -
Lele47g0053 594 PRINTS C2 domain signature 327 340 IPR000008 -
Lele47g0053 594 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 437 541 IPR035892 -
Lele47g0053 594 MobiDBLite consensus disorder prediction 552 575 - -
Lele47g0053 594 ProSiteProfiles C2 domain profile. 421 542 IPR000008 -
Lele47g0053 594 Gene3D - 547 593 - -
Lele47g0053 594 FunFam Synaptotagmin-2 isoform A 278 432 - -
Lele47g0053 594 PRINTS Plant ascorbate peroxidase signature 558 568 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lele47g0053 594 PRINTS Plant ascorbate peroxidase signature 540 555 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lele47g0053 594 PRINTS Plant ascorbate peroxidase signature 572 594 IPR002207 GO:0004601|GO:0006979|GO:0020037
Lele47g0053 594 SUPERFAMILY Heme-dependent peroxidases 547 589 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lele47g0053 594 Pfam C2 domain 283 379 IPR000008 -
Lele47g0053 594 Pfam C2 domain 442 506 IPR000008 -
Lele47g0053 594 SMART C2_3c 284 384 IPR000008 -
Lele47g0053 594 SMART C2_3c 441 527 IPR000008 -
Lele47g0053 594 Gene3D C2 domain 441 546 IPR035892 -
Lele47g0053 594 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 280 416 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0053 Lele-ChrLele47 387766 394223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g0053 278 518 Lipid Metabolism Gene Families AT3G61300 27.626 8.02e-11 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1359 45 23216111 23222919 Lele47g0053 47 387766 394223 hybridization
Lele46g1455 46 21290523 21294951 Lele47g0053 47 387766 394223 hybridization