Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1300 ATGGATTGTCCACTTAGAAAATTGAGAAAGTTTTATCACATCTGTTTTCAATGGTCTTCTTCATTGTCTGCCTTTGAATGTTCTTCTGCTTCTTTTGATGCTAATCCAAGTTCTCTTCTGTCTGAAATGGAGTACCAGGATCGCTTTAGACAGGCCCAGAAACCAAAATACGATTGCCTTCTTTTCGATTTAGATGATACTCTGTATCCACTCAGTACTGGTCTGGCGAAAGATTGCGGCCAGAACATCAAAGATTACATGGTTGAGAAGCTTGGCATAGACGGAAGCAAGATTGATGACTTGTCCACTCTTCTGTACAGAAACTATGGAACAACCATGTCTGGACTTAGGGCAATTGGATATGACTTCGATTATGATGCATATCACAGTTTTGTCCATGGGAGATTGCCTTATGAGAACCTGAAACCAGACCCTGTTCTGAGGAACCTTTTGCTGAGCCTGCCCTACAGGAAACTGATATTCACAAATGCAGATAAGGTTCATGCAGTGAAGTCACTGAGCAGACTTGGATTAGAGGATTGCTTTGAAGGGATTATATGTTTTGAGACTCTTAATCCCATCCACAAGAACAATGTTACAGAAGATGAAGAAGATGAAGAAGATGAATGTGAGCCCAACACTAGTCCTACCACAAGCAACAGCAATAATGGTTCTGAAATCTTTGACATTACAGGACATTTTGCTCAACCCAATGCCGACACCTCAGTGTTGCCTAAGACACCAATCATCTGCAAACCTTCAGAACATGCCATTGAATTGGCCCTCAAGATTGCAAACCTTAACCCACAAAGAACTTTGTTCTTTGAGGATAGTGTCCGCAACATTCAAGCTGGCAAGCGTCTGGGCCTTGACACTGTACAGGTTGGTGCATCTCAGAGAGCGAAAGGGGCAGATTATGCTTTAGAAAGCATTCATAACCTTAGAGAAGCAGTGCCTGAGCTATGGGAAGCTAATATCAAATCAGAAGTTGCATACCCTGGAAAGCTTGCTGTGGAGACTCCTGTTACTGCCTAA 1035 0.4251 MDCPLRKLRKFYHICFQWSSSLSAFECSSASFDANPSSLLSEMEYQDRFRQAQKPKYDCLLFDLDDTLYPLSTGLAKDCGQNIKDYMVEKLGIDGSKIDDLSTLLYRNYGTTMSGLRAIGYDFDYDAYHSFVHGRLPYENLKPDPVLRNLLLSLPYRKLIFTNADKVHAVKSLSRLGLEDCFEGIICFETLNPIHKNNVTEDEEDEEDECEPNTSPTTSNSNNGSEIFDITGHFAQPNADTSVLPKTPIICKPSEHAIELALKIANLNPQRTLFFEDSVRNIQAGKRLGLDTVQVGASQRAKGADYALESIHNLREAVPELWEANIKSEVAYPGKLAVETPVTA 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1300 344 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 250 295 IPR006439 -
Lele44g1300 344 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 58 294 IPR010237 -
Lele44g1300 344 SUPERFAMILY HAD-like 56 322 IPR036412 -
Lele44g1300 344 Pfam Haloacid dehalogenase-like hydrolase 215 295 IPR041492 -
Lele44g1300 344 Gene3D - 123 322 IPR023214 -
Lele44g1300 344 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 50 343 - -
Lele44g1300 344 SFLD Haloacid Dehalogenase 52 324 - -
Lele44g1300 344 MobiDBLite consensus disorder prediction 198 229 - -
Lele44g1300 344 SFLD C1.5.3: 5'-Nucleotidase Like 52 324 IPR010237 -
Lele44g1300 344 MobiDBLite consensus disorder prediction 213 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1300 Lele-ChrLele44 21280046 21281804 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g0246 39 1643796 1647246 Lele44g1300 44 21280046 21281804 CCT
Lele44g1300 44 21280046 21281804 Lele44g1300 44 21280046 21281804 ECH
Lele41g0052 41 373741 376281 Lele44g1300 44 21280046 21281804 hybridization
Lele42g0053 42 394884 397257 Lele44g1300 44 21280046 21281804 hybridization