Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0436 ATGGACGGTAGAGATGAGGTCGTCGCAGCTCCGGCAGGTCCACCGCAGCCTCTGGAGTGGAAATTCTCGCAAGTTTTTGGTGAACGTACCGCCGGGGAGGAAGTTCAGGAAGTGGACATAATTTCTGCCATTGAATTTGATAAGTCTGGTGATCATCTTGCTACTGGCGATCGTGGTGGTCGAGTAGTTCTATTTGAGAGGACAGACACGAAAGATCATGGAGGATCAAGAAGGGATTTGGAAGGGATGGATTATACAATAAGTAGGCATCCTGAGTTCCGATATAAAACTGAGTTTCAGAGTCATGAACCTGAGTTCGATTATCTAAAGAGCTTGGAAATTGAAGAGAAAATAAACAAAATCAGATGGTGCCAAGCAGCTAATGGTGCCTTGTTTTTTCTATCTACAAATGATAAAACCATCAAATATTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATATCTGAGATGAATGTTGACCCATCGAAAACAATGGCAAATGGCAGTATTAGCAGTATTGCTAGTTCAAGTAGCCCTAGGCCATATCTTGCAAATGGAGGATCTCCAGATAAATCATACCTGACCAATGACTTCTTATTTCCACCTGGGGGCATCCCATCGTTAAGATTGCCTGTGGTAACCAGCCATGAAACCAGCCTCGTAGCTCGATGTCGTAGAGTATATGCCCATGCTCACGATTATCATATCAATTCCATATCAAGTAACAGTGATGGCGAAACTTTCATATCTGCTGATGATTTGCGGATAAATCTGTGGAACCTAGAAATTAGCAATCAAAGTTTTAATATTGTAGATGTAAAGCCTGCAAACATGGAGGATCTTACTGAGGTTATAACATCAGCCGACTTTCACCCTACCCATTGTAATATGTTGGCCTATAGCAGTTCAAAGGGTTCAATCCGTCTTGTTGATCTGCGTCAATCAGCATTGTGTGATACTCATGCCAAATTGTTTGAGGAACAGGAGGCCCCAGGGTCCAGATCCTTTTTTACAGAGATTATTGCTTCGATTTCAGATATAAAATTTGGGAAGGATGGAAGATACATACTTAGTCGTGATTACATGACTCTAAAGTTATGGGACATTAATATGGATTCTGGCCCAGTTGCAACTTTCCAGGTTCATGAATATCTAAGACCTAAGCTATGTGACTTATATGAGAATGATTCAATTTTTGATAAGTTCGAGTGTTGTTTGAGTGGGGATGGGTTGCGTGTGGCAACTGGTTCATACAGCAACCTTTTCCGTGTGTTTGGCTGCATCCCAGGAAGTACTGAGGCTACAACCTTGGAAGCCAGTAAAAATCCAATGAGGCGACAAGTTCAGACCCCTGCAAGACCAGCTAGATCACTGGGAAGCAGTCTAACTCGAGTTGTAAGGCGAGGAGCTGATAGTTCGGGCGTTGATGCAAATGGGAACACTTTTGATTTCACTACAAAGTTGCTGCACTTAGCGTGGCACCCGACTGAAAATTCGATTGCTTGTGCTGCTGCAAATAGTTTGTACATGTACTATGCATAA 1542 0.4248 MDGRDEVVAAPAGPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRRDLEGMDYTISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQAANGALFFLSTNDKTIKYWKVQEKKVKKISEMNVDPSKTMANGSISSIASSSSPRPYLANGGSPDKSYLTNDFLFPPGGIPSLRLPVVTSHETSLVARCRRVYAHAHDYHINSISSNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSADFHPTHCNMLAYSSSKGSIRLVDLRQSALCDTHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCIPGSTEATTLEASKNPMRRQVQTPARPARSLGSSLTRVVRRGADSSGVDANGNTFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0436 513 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 196 - -
Lele44g0436 513 Gene3D - 36 194 IPR015943 GO:0005515
Lele44g0436 513 Gene3D - 211 508 IPR015943 GO:0005515
Lele44g0436 513 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 207 509 - -
Lele44g0436 513 PIRSF PPA2_B55 11 513 IPR000009 GO:0000159|GO:0019888
Lele44g0436 513 SUPERFAMILY WD40 repeat-like 39 505 IPR036322 GO:0005515
Lele44g0436 513 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 15 513 IPR000009 GO:0000159|GO:0019888
Lele44g0436 513 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Lele44g0436 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 232 259 IPR000009 GO:0000159|GO:0019888
Lele44g0436 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 317 344 IPR000009 GO:0000159|GO:0019888
Lele44g0436 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 373 398 IPR000009 GO:0000159|GO:0019888
Lele44g0436 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Lele44g0436 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Lele44g0436 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 399 425 IPR000009 GO:0000159|GO:0019888
Lele44g0436 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 288 316 IPR000009 GO:0000159|GO:0019888
Lele44g0436 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 345 372 IPR000009 GO:0000159|GO:0019888
Lele44g0436 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 482 511 IPR000009 GO:0000159|GO:0019888
Lele44g0436 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 260 287 IPR000009 GO:0000159|GO:0019888
Lele44g0436 513 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Lele44g0436 513 Pfam WD domain, G-beta repeat 224 260 IPR001680 GO:0005515
Lele44g0436 513 SMART WD40_4 330 368 IPR001680 GO:0005515
Lele44g0436 513 SMART WD40_4 271 311 IPR001680 GO:0005515
Lele44g0436 513 SMART WD40_4 105 145 IPR001680 GO:0005515
Lele44g0436 513 SMART WD40_4 221 260 IPR001680 GO:0005515
Lele44g0436 513 SMART WD40_4 372 426 IPR001680 GO:0005515
Lele44g0436 513 SMART WD40_4 31 66 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0436 Lele-ChrLele44 3253823 3261199 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele44g0436 44 3253823 3261199 Lele37g0337 37 2823430 2826498 CCT
Lele44g0436 44 3253823 3261199 Lele39g1088 39 19457280 19460400 CCT
Lele41g0951 41 19011887 19018965 Lele44g0436 44 3253823 3261199 hybridization
Lele42g0920 42 21935290 21942418 Lele44g0436 44 3253823 3261199 hybridization