Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1088 ATGGGTTTCTTCAAGTGGGTATGCTTGATCCTCTTGTTTAATCTCTTTGCGGCAACACTTGTTTTATCAGATTTCTCCCTGGGTTCAAACCCTCCATTATCAGCAATTCCCATTGAGTTCTTACAATATGCCAAAAAGCCAGAGGTTTTGGATTGGATGATTGAAATTCGAAGGAAGATTCATGAGAACCCTGAACTGGGCTATGAGGAATTTATGACCAGTGAACTGATAAGAGAGAAATTGGATAAATTGGGCATCTCTTATGAATACCCAATTGCAGTTACTGGCGTTATTGGCTTCATAGGTACAGGACGGCCTCCTTTTGTTGCAATAAGAGCCGATATGGATGCTCTTGCTATGCAGGAAATGGTGGAGTGGGAGCACAAAAGTAAAGTACCTGGAAAGATGCATGCTTGTGGACACGATGCTCATGTTGCTATGCTTCTTGGTGCTGCAAAGATCCTCAAAGAGCATGAAAAACAGATAAAAGGAACTGTTGTGCTTGTTTTCCAACCAGCAGAGGAAGGCGGTGGAGGGGCTAAGAAAGTTTTAGATGCTGGGGCTTTAGAAAATGTCTCTGCTATCTTTGGATTGCATATCGCGCCTCAATTATCTATTGGTGAAGTAGCCTCTAGGTCTGGTCCCTTTTTGGCAGGAAGTGGCTTCTTTGAAGCAGTAATTAGTGGAAAGGGAGGTCATGCAGCTATTCCCCAGCATACAATAGACCCCATATTGGCTGCTTCTAATGTGATTGTTAGCTTGCAACATCTTGTTTCTCGTGAGGCTGATCCTCTGGACTCCCAGGTCGTGACGGTAGCAAAATTTCAAGGAGGCGGTGCATTCAATGTTATTCCAGATTCAGTCACAATTGGTGGCACCTTCCGAGCTTTTTCAAGGGAAAGTTTCATGCAACTGAGACAGCGGATTGAGCAGGTTATTACTGGGCAGGCGGCTGTGCAGAGGTGCAATGCAACAGTTAACTTTCTCGACAAAGATAAACTCTTCTTCCCCCCGACTGTTAACGATGGTGACCTGCACAAGCATTTTCAAAAAGTAGCGAGGGATTTGCTAGGGATTAATAAAGTTAAAGAAATGCAACCGTTGATGGGGTCTGAGGACTTTGCATTCTATCAAGAGAGTCTACCTGGTTACTTCTTCTTGCTTGGAATGGAAGACGCTTCAATTGAACAGCTTGAATCGGTACACTCACCCCATTTCAAAATCAATGAAGATGTACTTCCTTATGGAGCTTCACTTCATGCATCGTTAGCAGCTAGTTATCTTCTAAAGTTTCAGCAGAATGTGCCGGTGGTGGAAGGTAATCATCATGATGAATTATAG 1341 0.4355 MGFFKWVCLILLFNLFAATLVLSDFSLGSNPPLSAIPIEFLQYAKKPEVLDWMIEIRRKIHENPELGYEEFMTSELIREKLDKLGISYEYPIAVTGVIGFIGTGRPPFVAIRADMDALAMQEMVEWEHKSKVPGKMHACGHDAHVAMLLGAAKILKEHEKQIKGTVVLVFQPAEEGGGGAKKVLDAGALENVSAIFGLHIAPQLSIGEVASRSGPFLAGSGFFEAVISGKGGHAAIPQHTIDPILAASNVIVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIPDSVTIGGTFRAFSRESFMQLRQRIEQVITGQAAVQRCNATVNFLDKDKLFFPPTVNDGDLHKHFQKVARDLLGINKVKEMQPLMGSEDFAFYQESLPGYFFLLGMEDASIEQLESVHSPHFKINEDVLPYGASLHASLAASYLLKFQQNVPVVEGNHHDEL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1088 446 SUPERFAMILY Zn-dependent exopeptidases 48 429 - -
Lele39g1088 446 CDD M20_IAA_Hyd 53 428 IPR044757 GO:0009850|GO:0016787
Lele39g1088 446 Gene3D - 218 336 - -
Lele39g1088 446 Pfam Peptidase family M20/M25/M40 110 424 IPR002933 GO:0016787
Lele39g1088 446 PANTHER PEPTIDASE M20 FAMILY MEMBER 35 435 IPR017439 GO:0016787
Lele39g1088 446 PIRSF Amidohydrol_AmhX 38 432 IPR017439 GO:0016787
Lele39g1088 446 FunFam N-acetyldiaminopimelate deacetylase 218 336 - -
Lele39g1088 446 TIGRFAM amidohydrolases: amidohydrolase 53 415 IPR017439 GO:0016787
Lele39g1088 446 Gene3D Zn peptidases 53 413 - -
Lele39g1088 446 SUPERFAMILY Bacterial exopeptidase dimerisation domain 219 328 IPR036264 -
Lele39g1088 446 Pfam Peptidase dimerisation domain 219 316 IPR011650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1088 Lele-ChrLele39 19457280 19460400 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0446 43 3910300 3917361 Lele39g1088 39 19457280 19460400 CCT
Lele44g0436 44 3253823 3261199 Lele39g1088 39 19457280 19460400 CCT
Lele37g0337 37 2823430 2826498 Lele39g1088 39 19457280 19460400 hybridization