Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g0951 ATGAACGGTGGCGATGAGGTCGTCGCAGCTCCGGCGGGTCCACCGCAGCCGCTGGAGTGGAAATTCTCGCAGGTTTTTGGTGAACGTACGGCCGGGGAGGAAGTTCAGGAAGTGGACATAATTTCTGCCATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGTGGTGGTCGAGTAGTTCTATTTGAGAGGACAGATACGAAAGATCATGGAGGATCAAGAAGGGATTTGGAAGGGATGGATTATACAATAAGTAGGCATCCTGAGTTCCGATATAAAACTGAGTTTCAGAGTCATGAACCTGAGTTCGATTATCTAAAGAGCTTGGAAATTGAAGAGAAAATAAACAAAATCAGATGGTGCCAAACAGCTAATGGTGCCTTGTTTCTTCTATCTACAAATGATAAAACCATCAAATATTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATATCTGAGATGAATGTTGACCCGTCAAAAGCAATGGCAAATGGCTGTATCAGCAGTATTGCGAGTTCAAGTAATTCAAGTAGCCCTAGGCCATATCTTGCAAATGGAGGATCTCCAGATAAATCATACCTGACCAATGACCTCTCATTTCCACCTGGGGGCATCCCATCGTTAAGATTACCTGTGGTAGTAACCAGCCATGAAACCAGCCTTGTAGCTCGATGTCGTAGAGTGTATGCCCATGCTCATGATTATCATATCAATTCTATATCAAGTAACAGTGATGGCGAAACTTTCATATCTGCTGATGATTTGCGAATAAATCTGTGGAACCTAGAAATTAGCAACCAAAGTTTTAATATTGTAGATGTAAAGCCTGCAAACATGGAGGATCTGACTGAGGTGATAACGTCAGCAGAGTTTCACCCTACCCATTGTAATATGTTGGCCTATAGCAGTTCAAAGGGTTCAGTCCGTCTTGTTGATCTGCGTCAATCAGCATTGTGTGATACTCATGCCAAATTGTTTGAGGAACAGGAGTCCCCTGGGTCCAGATCCTTTTTTACAGAGATTATTGCTTCGATTTCAGATATAAAATTTGGGAAGGAGGGAAGATACATACTTAGTCGTGATTACATGACTCTAAAGTTATGGGACATTAATATGGATTCTGGTCCAGTTTCAACTTTCCAGGTTCATGAATATCTAAGACCTAAGCTATGTGACTTATATGAAAATGATTCAATTTTTGATAAGTTCGAATGTTGTTTGAGTGGCGATGGGTTGCATGTAGCAACTGGTTCATACAGCAACCTATTCCGCGTGTTTGGCTGCATCCCAGGAAGTACTGAGGCTACAACCTTAGAAGCCAGTAAAAATCCAATGAGGCGACAAGTTCAGCCCCCTGCAAGGCCAGCTAGATCATTGGGAAGCAGTTTAACTCGAGTTGTAAGGCGAGGAGCTGATAGTCCGGGTGTTGATTCAAATGGGAACACTTTTGATTTCACTACAAAGTTGCTGCACTTAGCATGGCACCCGACTGAAAATTCAATTGCCTGTGCTGCTGCAAATAGTTTGTACATGTACTATGCATAA 1554 0.4234 MNGGDEVVAAPAGPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRRDLEGMDYTISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKYWKVQEKKVKKISEMNVDPSKAMANGCISSIASSSNSSSPRPYLANGGSPDKSYLTNDLSFPPGGIPSLRLPVVVTSHETSLVARCRRVYAHAHDYHINSISSNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSVRLVDLRQSALCDTHAKLFEEQESPGSRSFFTEIIASISDIKFGKEGRYILSRDYMTLKLWDINMDSGPVSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLHVATGSYSNLFRVFGCIPGSTEATTLEASKNPMRRQVQPPARPARSLGSSLTRVVRRGADSPGVDSNGNTFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g0951 517 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 15 517 IPR000009 GO:0000159|GO:0019888
Lele41g0951 517 PIRSF PPA2_B55 11 517 IPR000009 GO:0000159|GO:0019888
Lele41g0951 517 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 210 513 - -
Lele41g0951 517 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Lele41g0951 517 Gene3D - 211 511 IPR015943 GO:0005515
Lele41g0951 517 SMART WD40_4 399 430 IPR001680 GO:0005515
Lele41g0951 517 SMART WD40_4 275 315 IPR001680 GO:0005515
Lele41g0951 517 SMART WD40_4 105 145 IPR001680 GO:0005515
Lele41g0951 517 SMART WD40_4 225 264 IPR001680 GO:0005515
Lele41g0951 517 SMART WD40_4 31 66 IPR001680 GO:0005515
Lele41g0951 517 Pfam WD domain, G-beta repeat 228 264 IPR001680 GO:0005515
Lele41g0951 517 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 199 - -
Lele41g0951 517 Gene3D - 35 199 IPR015943 GO:0005515
Lele41g0951 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Lele41g0951 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Lele41g0951 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 349 376 IPR000009 GO:0000159|GO:0019888
Lele41g0951 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 486 515 IPR000009 GO:0000159|GO:0019888
Lele41g0951 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Lele41g0951 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 264 291 IPR000009 GO:0000159|GO:0019888
Lele41g0951 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 377 402 IPR000009 GO:0000159|GO:0019888
Lele41g0951 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 236 263 IPR000009 GO:0000159|GO:0019888
Lele41g0951 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 292 320 IPR000009 GO:0000159|GO:0019888
Lele41g0951 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 403 429 IPR000009 GO:0000159|GO:0019888
Lele41g0951 517 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 321 348 IPR000009 GO:0000159|GO:0019888
Lele41g0951 517 SUPERFAMILY WD40 repeat-like 39 509 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g0951 Lele-ChrLele41 19011887 19018965 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0951 41 19011887 19018965 Lele43g0446 43 3910300 3917361 hybridization
Lele41g0951 41 19011887 19018965 Lele44g0436 44 3253823 3261199 hybridization