Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0222 ATGGGTTGCAGACCCTCAAGGGAAGAGAAAAACAATCTTGGACCTAGCCATGAAGAATTTTCTCGCCTCTCCTCAGAAACACCATTTTCTAGAAGTGATGTGGAATCCTTGTATGAGTTGTACAAAAAATTAAGCGCTTCTGTTGTCCAAGACGGTTATATTCGGAAGGAAGATCTTCACTTCGCCCTTTTCAGAAGCAGCAAGAAGCGAAATCTTTTTGTGGACAGAATGTTTGATCTTTTCGATGTCGACGACAATGGTCAAATTGAGTTTTCTGAATTTGTTCGATCCTTGAGTGTCTTTCACCCGAAAACTCCGGAACCAATCAAAATAAAATATGCATTTAAATTATACGATCTGAGGTGCACAGGCTTCATCGAACGTGAAGAGTTGAAGGAGATGGTGCTGGCAATCTTGACCGAGTCCGATCTGAAACTCTCTAACGATGCGGTTGAAACGATAGTGGACAAGACATTCGTGGCGGCAGACAAGAAAGGCGACGGGAAAATTGATCCAGAAGAATGGAAACAATATGCGGAAGACAACCCTTCATTACTGAAGAACATGACTCTACCTTATCTGATGGACATAACTGTTGCATTTCCCAGTTTTTTGATGAGCTCAGAAACCGAAGAATCACAGTTCCGTTCTACGTATAATTATAAAGCTAGGAGGCTACACGCGTCTGTATCTTCTTCCATAGTTGTGCTTCTCAGTCAGAGTCAATTGGGAATTTTTTTCCTCATTTCACGAGCTTTGAATGAGAATTCTACCTTCAAAACCTTCGGCTTCGTTCCAAACTGTTCCAATTATGCGAAACCCCTTTCTGTTTGTTTTTCTATAATTGGTGATCAGCCTAAAGCTTGCGATTTTCTTTTCATCAATTTCCTCCGGTAA 897 0.4114 MGCRPSREEKNNLGPSHEEFSRLSSETPFSRSDVESLYELYKKLSASVVQDGYIRKEDLHFALFRSSKKRNLFVDRMFDLFDVDDNGQIEFSEFVRSLSVFHPKTPEPIKIKYAFKLYDLRCTGFIEREELKEMVLAILTESDLKLSNDAVETIVDKTFVAADKKGDGKIDPEEWKQYAEDNPSLLKNMTLPYLMDITVAFPSFLMSSETEESQFRSTYNYKARRLHASVSSSIVVLLSQSQLGIFFLISRALNENSTFKTFGFVPNCSNYAKPLSVCFSIIGDQPKACDFLFINFLR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0222 298 CDD EFh 74 135 IPR002048 GO:0005509
Lele44g0222 298 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Lele44g0222 298 Pfam EF-hand domain pair 110 177 IPR002048 GO:0005509
Lele44g0222 298 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
Lele44g0222 298 FunFam calcineurin B-like protein 3 19 212 - -
Lele44g0222 298 ProSiteProfiles EF-hand calcium-binding domain profile. 106 141 IPR002048 GO:0005509
Lele44g0222 298 MobiDBLite consensus disorder prediction 1 24 - -
Lele44g0222 298 ProSiteProfiles EF-hand calcium-binding domain profile. 150 185 IPR002048 GO:0005509
Lele44g0222 298 CDD EFh 110 177 IPR002048 GO:0005509
Lele44g0222 298 Pfam EF hand 74 96 IPR002048 GO:0005509
Lele44g0222 298 PANTHER CALCINEURIN B 3 213 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lele44g0222 298 MobiDBLite consensus disorder prediction 1 16 - -
Lele44g0222 298 PRINTS Recoverin family signature 77 98 - -
Lele44g0222 298 PRINTS Recoverin family signature 170 190 - -
Lele44g0222 298 PRINTS Recoverin family signature 124 142 - -
Lele44g0222 298 SMART efh_1 73 101 IPR002048 GO:0005509
Lele44g0222 298 SMART efh_1 110 138 IPR002048 GO:0005509
Lele44g0222 298 SMART efh_1 154 182 IPR002048 GO:0005509
Lele44g0222 298 SUPERFAMILY EF-hand 22 204 IPR011992 -
Lele44g0222 298 Gene3D - 20 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0222 Lele-ChrLele44 1455998 1460812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0222 27 218 EF-hand Containing Proteins AT5G24270 61.458 6.67e-82 244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele44g0222 44 1455998 1460812 Lele44g0222 44 1455998 1460812 ECH
Lele01g0198 01 1110664 1112401 Lele44g0222 44 1455998 1460812 hybridization
Lele02g0197 02 1069427 1073093 Lele44g0222 44 1455998 1460812 hybridization