Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0197 ATGAAGGGCTTGGAGAAAGTGAAATACTCTAAGTCAGCAGGTTATGAGGAACCCACTGTTCTTTCTGCTGAGACACCTTGTGAGTATCATCAGACTGTTGCTTTTAGGTTGTATGATCTGAGGCAGACGGGATATATTGAACGAGAGGAGCTAAAGGAGATGGTATTGGCTCTTCTACATGAGTCAGATCTTGTACTTTCAGATGATATTATCGAGACCATTGTGGATAAGACATTTAGTGATGCTGATGCAAAAGGTGATGGAAAGATTGATCAAGAGGAGTGGAAGGCATTTGTCTCAAAACATCCATCTTTGATGAAGAACATGACCCTTCCCTACTTAATGGATATAACATTAGCATTTCCGAGTTTTGTGGTAAGAATGGAAGTTGAAGACTCAGAGTGTCTGATCTTCTTTGCATGTGAACCGAGCTTAAAATTGGGGAATGCTTTATTTTCAATACTTTGGGTTGAGATGCTTGTTGCTTGGTCAGGATCAGAACGAGGCGCTCAGGGCAGGAAGCCAATGTTGTCAAAGAAAATGCTTCATGCCATTGAAAGTACTATACAACCTTAG 576 0.4097 MKGLEKVKYSKSAGYEEPTVLSAETPCEYHQTVAFRLYDLRQTGYIEREELKEMVLALLHESDLVLSDDIIETIVDKTFSDADAKGDGKIDQEEWKAFVSKHPSLMKNMTLPYLMDITLAFPSFVVRMEVEDSECLIFFACEPSLKLGNALFSILWVEMLVAWSGSERGAQGRKPMLSKKMLHAIESTIQP 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0197 191 ProSiteProfiles EF-hand calcium-binding domain profile. 34 61 IPR002048 GO:0005509
Lele02g0197 191 Pfam EF-hand domain pair 34 98 IPR002048 GO:0005509
Lele02g0197 191 CDD EFh 34 100 IPR002048 GO:0005509
Lele02g0197 191 SUPERFAMILY EF-hand 32 124 IPR011992 -
Lele02g0197 191 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
Lele02g0197 191 PANTHER CALCINEURIN B 20 133 IPR045198 GO:0005509|GO:0019722|GO:0019900
Lele02g0197 191 Gene3D - 19 133 - -
Lele02g0197 191 SMART efh_1 74 102 IPR002048 GO:0005509
Lele02g0197 191 SMART efh_1 30 58 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0197 Lele-ChrLele02 1069427 1073093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0197 8 134 EF-hand Containing Proteins AT5G24270 59.843 8.44e-46 148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0198 01 1110664 1112401 Lele02g0197 02 1069427 1073093 ECH
Lele02g0197 02 1069427 1073093 Lele02g0197 02 1069427 1073093 ECH
Lele02g0197 02 1069427 1073093 Lele44g0222 44 1455998 1460812 hybridization