LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele01g0198	ATGGGCTGCTTTTGTTCAAAGAAAGCTAACTCAGCAGGTTATGAGGAACCCACAGTTCTTGCTGCGGAGACACCTTTCTCTGTGAGTGAAGTGGAGGCTCTACATGAACTCTATAAGAAGTTGAGCAACTCCATTATTGAAGATGGTGTTATTCACAAGGAAGAATTCCAGCTGGCACTCTTCAGGAATAAAAACAAGAGAAATCTGTTTGCAGACAGGGTTTTTGACTTATTTGATGTCAAGCGTAATGGGGTTATTGAATTTGGGGAATTTGTTCGATCATTGGGTGTTTTTCACCCAAATGCACCTATAGAAGACAAGATTACTTTTGCTTTTAGGTTGTATGATCTGACGCAGACGGGATACATTGAACGGGAGGAGCTAAAGGAGATGGTATTGGCGCTTCTACATGAGTCAGATCTTGTACTTTCAGATGATATTATCGAGACCATTGTGGATAAGACATTTAATGACGCTGATGCAAAAGGTGATGGAAGGATTGATCAAGAGGAGTGGAAGGCATTTGTCTCAAAGCATCCATCTTTGATGAAGAACATGACCCTTCCCTACTTAATGTGGGGATATAACCTTAGCGTTTCCGAGTTTTGTGGTAAGAACGGAAGTTGA	627	0.4131	MGCFCSKKANSAGYEEPTVLAAETPFSVSEVEALHELYKKLSNSIIEDGVIHKEEFQLALFRNKNKRNLFADRVFDLFDVKRNGVIEFGEFVRSLGVFHPNAPIEDKITFAFRLYDLTQTGYIEREELKEMVLALLHESDLVLSDDIIETIVDKTFNDADAKGDGRIDQEEWKAFVSKHPSLMKNMTLPYLMWGYNLSVSEFCGKNGS	208

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele01g0198	208	Pfam	EF-hand domain pair	106	175	IPR002048	GO:0005509
	Lele01g0198	208	Gene3D	-	16	205	-	-
	Lele01g0198	208	ProSiteProfiles	EF-hand calcium-binding domain profile.	103	138	IPR002048	GO:0005509
	Lele01g0198	208	SUPERFAMILY	EF-hand	19	197	IPR011992	-
	Lele01g0198	208	PANTHER	CALCINEURIN B	1	192	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Lele01g0198	208	ProSiteProfiles	EF-hand calcium-binding domain profile.	66	101	IPR002048	GO:0005509
	Lele01g0198	208	FunFam	calcineurin B-like protein 3	16	195	-	-
	Lele01g0198	208	Pfam	EF hand	72	93	IPR002048	GO:0005509
	Lele01g0198	208	CDD	EFh	107	177	IPR002048	GO:0005509
	Lele01g0198	208	SMART	efh_1	107	135	IPR002048	GO:0005509
	Lele01g0198	208	SMART	efh_1	70	98	IPR002048	GO:0005509
	Lele01g0198	208	SMART	efh_1	151	179	IPR002048	GO:0005509
	Lele01g0198	208	PRINTS	Recoverin family signature	167	187	-	-
	Lele01g0198	208	PRINTS	Recoverin family signature	121	139	-	-
	Lele01g0198	208	PRINTS	Recoverin family signature	74	95	-	-
	Lele01g0198	208	ProSiteProfiles	EF-hand calcium-binding domain profile.	147	182	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele01g0198	Lele-ChrLele01	1110664	1112401	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele01g0198	24	191	EF-hand Containing Proteins	AT5G24270	76.190	7.63e-94	270

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele01g0198	01	1110664	1112401	Lele02g0197	02	1069427	1073093	ECH
	Lele01g0198	01	1110664	1112401	Lele01g0198	01	1110664	1112401	ECH
	Lele01g0198	01	1110664	1112401	Lele44g0222	44	1455998	1460812	hybridization