Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0162 ATGACATCGCAGCCCTCCGCTCACCATCAAATGCAGAGCCAAAGGCACCAACAGTGGGGAGGCTTGAATAAGGTCCTCCCTTTCGAATCTATGGCGGGAGAAACATCATGGATCATTCACTACCTTGATAATACAACCAGGGAGACTAGAGAGTTTGATTCATTTTTAGAACTAGGTGAGGAAAGTGATAAAGAAGTCACTGCTGTTTCTGTGGATAGTATTTTGCCTGATGATCTGTTGGAACGTATCCTAGCTTATCTTCCCATTGCAAGCATCTTCAGAGCAGGCTGTGTCTGTAAGAGATGGCAAGAAATCGTCACCTCAAAGACGTTTCTGTGGAACCTTTCACATGTGCTTCCGCAGAAACCTTGGTACTTTATGTTTACAAGCTTTGATGAGCCAAATGGTTATGCTTATGACCCCATCCTCCGGAAATGGTATGGCATTGAACTTCCCTGCATCGACACTTCTAATTGGTTCATCGCATCATCGTGTGGTTTAGTTTGCTTCATGGACAATGACAATCGAAGTGAACTATTCGTATGCAACCCCATTACTAGAATCTTTATGAAGCTTGAGGGGCCACCCGGTTCTGAATTTTCTGAGTACAGTGCATTGGCAATTTCAGTAAACAGAGTATCACAAAGTTACACAGTGGCTATTGTGAAATCAAAGGAAGTGCCTGAGAATTTCTCCCAATCTGTTATTTCAATTCATATATACAATTCAGAAGATAAGACCTGGGTGACCAGTTTAACAGAGGTTTTGATAGGGTGGAGAGGTGGTGATGAGAGTGTGATATGTAATGGGGTGCTGTACTTTTTGGTTTATTCAACCGGGGGTGGCCACCCAGAAAACCGACACGCCCTGGTTGCATATAACATCACCAACCATTCGTCTCAGCGATCCTTGGCAAGGAGCTTTATTCCAATACCTTGCCCTTTAACATGTGGTCGTCTGATGAATTTGAAGGAGAAGCTTGTAATGGTGGGAGGTCTCGGTAAACCTGATCGGCCAGACATTATAAAAGGGATTGGCATATGGGTGCTAAATGATAGGAAATGGGATGAAATCGCTCGAATGCCTCACAAATTCTTTCAAGGATTTGGAGAGTTGGATGACGTCTTTGCTAGCAGTGGTACAGATGATCTAATATATATTCAAAGCTATGGAGCCTCAGCACTTCTCACATATGACATGAACCATAAACAATGGAAATGGTCACAGAAGTGTCCAGTGACAAAAAGATTTCCACTACAACTCTTCACTGGGTTTTGCTTTGAACCCAGGCTTGAAATTTCTCCATAG 1308 0.4312 MTSQPSAHHQMQSQRHQQWGGLNKVLPFESMAGETSWIIHYLDNTTRETREFDSFLELGEESDKEVTAVSVDSILPDDLLERILAYLPIASIFRAGCVCKRWQEIVTSKTFLWNLSHVLPQKPWYFMFTSFDEPNGYAYDPILRKWYGIELPCIDTSNWFIASSCGLVCFMDNDNRSELFVCNPITRIFMKLEGPPGSEFSEYSALAISVNRVSQSYTVAIVKSKEVPENFSQSVISIHIYNSEDKTWVTSLTEVLIGWRGGDESVICNGVLYFLVYSTGGGHPENRHALVAYNITNHSSQRSLARSFIPIPCPLTCGRLMNLKEKLVMVGGLGKPDRPDIIKGIGIWVLNDRKWDEIARMPHKFFQGFGELDDVFASSGTDDLIYIQSYGASALLTYDMNHKQWKWSQKCPVTKRFPLQLFTGFCFEPRLEISP 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0162 435 Gene3D - 122 421 IPR015915 GO:0005515
Lele44g0162 435 Gene3D - 64 115 - -
Lele44g0162 435 TIGRFAM F_box_assoc_1: F-box protein interaction domain 165 368 IPR017451 -
Lele44g0162 435 FunFam F-box/kelch-repeat protein At3g61590 family 121 419 - -
Lele44g0162 435 ProSiteProfiles F-box domain profile. 69 116 IPR001810 GO:0005515
Lele44g0162 435 SMART fbox_2 75 115 IPR001810 GO:0005515
Lele44g0162 435 Pfam F-box-like 75 114 IPR001810 GO:0005515
Lele44g0162 435 PANTHER F-BOX FAMILY PROTEIN 40 432 IPR045048 -
Lele44g0162 435 SUPERFAMILY F-box domain 72 176 IPR036047 GO:0005515
Lele44g0162 435 SUPERFAMILY Galactose oxidase, central domain 136 413 IPR011043 -
Lele44g0162 435 FunFam F-box/kelch-repeat protein At3g61590 68 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0162 Lele-ChrLele44 1013127 1016123 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele44g0162 44 1013127 1016123 Lele44g0162 44 1013127 1016123 ECH
Lele41g1235 41 21227351 21231920 Lele44g0162 44 1013127 1016123 hybridization
Lele42g1191 42 24165023 24166240 Lele44g0162 44 1013127 1016123 hybridization