Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g1191 ATGGCGGGAGAAACATCATGGATCATTCACTGCCTTGATAATGCAACCAGGGATACTAGAGAGTTTGATTCATTTTTAGAACTTGGTGAGGAAAGTGATAAAGAAGTCGCTGCTGTTTCTGTGGATAGTATTTTGCCTGATGACCTGTTGGAACGTATCCTAGCTTATCTTCCCATTGCAAGCGTCTTCAGAGCAGGCTGTGTCTGTAAGAGATGGCACGAAATTGTTACCTCGAAGAGGTTTCTGTGGAACCTTTCACATGTGCTTCCGCAGAAACCTTGGTACTTTATGTTTACAAGCTTTGATGAGCCAACTGGTTATGCTTATGACCCCATCCTCCGGAAATGGTATGGCATTGAACTTCCCTGCATCGACACTTCTAATTGGTTCATCACATCGTCGTGTGGTTTAGTTTGCTTCATGGACAATGTCAATCGAAGTGAACTATTCGTGTGCAACCCCATTACTAGAATCTTTATGAAGCTTGAGGGGCCACCCGGTTCTGAATTTTCTGAGTACAGTGCATTGGCAATTTCAGTAAACAGAGTATCACAAAGTTACACAGTGGCTATTGTAAAATCAAAGGAAGTGCCTGAGAATTTCTCCCAATCTGTTATTTCAATTCATATATACAATTCAGAAGATAAGACCTGGGTGACCAGGTTAACAGAGGTTTTGATAGGGTGGAGAGGTGGTGATGAGAGTGTGATATGTAATGGGGTGCTGTACTTTTTGGTTTATTCAACCGGGGGTGGCCACCCAGAAAACCGACACACCCTCGTTGCATATAACATCACCAACCATTCGTCTCAGCAATCCTTGGCAAGGAGCTTTATTCCAATACCTTGTCCTTTAACATGTGGTCGTCTGATGAATTTGAAGGAGAAGCTTGTAATGGTGGGAGGTCTCGGTAAACCTGATCGGGCCGACATTATAAAAGGGATCGGCATATGGGTGCTAAATGATAGGAAATGGGATGAAATCGCTCGAATGCCTCACAAATTCTTTCAAGGATTTGGAGAGTTGGATGATGTCTTTGCTAGCAGTGGTACAGATGATCTAATATATATTCAAAGCTATGGAGCCTCAGCACTTCTCACATATGACATGAACCATAAACAATGGAGATGGTCACAGAAGTGTCCAGTGACAAAAAGATTTCCACTACAGCTCTTCACTGGGTTTTGCTTTGAACCCAGGCTTGAAATTTCTCCTTAG 1218 0.4286 MAGETSWIIHCLDNATRDTREFDSFLELGEESDKEVAAVSVDSILPDDLLERILAYLPIASVFRAGCVCKRWHEIVTSKRFLWNLSHVLPQKPWYFMFTSFDEPTGYAYDPILRKWYGIELPCIDTSNWFITSSCGLVCFMDNVNRSELFVCNPITRIFMKLEGPPGSEFSEYSALAISVNRVSQSYTVAIVKSKEVPENFSQSVISIHIYNSEDKTWVTRLTEVLIGWRGGDESVICNGVLYFLVYSTGGGHPENRHTLVAYNITNHSSQQSLARSFIPIPCPLTCGRLMNLKEKLVMVGGLGKPDRADIIKGIGIWVLNDRKWDEIARMPHKFFQGFGELDDVFASSGTDDLIYIQSYGASALLTYDMNHKQWRWSQKCPVTKRFPLQLFTGFCFEPRLEISP 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g1191 405 Gene3D - 35 85 - -
Lele42g1191 405 Gene3D - 95 392 IPR015915 GO:0005515
Lele42g1191 405 SUPERFAMILY F-box domain 42 143 IPR036047 GO:0005515
Lele42g1191 405 FunFam F-box/kelch-repeat protein At3g61590 family 91 389 - -
Lele42g1191 405 FunFam F-box/kelch-repeat protein At3g61590 38 85 - -
Lele42g1191 405 TIGRFAM F_box_assoc_1: F-box protein interaction domain 135 339 IPR017451 -
Lele42g1191 405 PANTHER F-BOX FAMILY PROTEIN 5 402 IPR045048 -
Lele42g1191 405 Pfam F-box domain 44 82 IPR001810 GO:0005515
Lele42g1191 405 SUPERFAMILY Galactose oxidase, central domain 106 383 IPR011043 -
Lele42g1191 405 SMART fbox_2 45 85 IPR001810 GO:0005515
Lele42g1191 405 ProSiteProfiles F-box domain profile. 39 86 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g1191 Lele-ChrLele42 24165023 24166240 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g1191 42 24165023 24166240 Lele42g1191 42 24165023 24166240 ECH
Lele42g1191 42 24165023 24166240 Lele43g0161 43 1506254 1511871 hybridization
Lele42g1191 42 24165023 24166240 Lele44g0162 44 1013127 1016123 hybridization