Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1235 ATGTCTATGCTCACCGAATTTGTTCGGACCCATTTTCGCAGCGACAGTGGGGAGGCTTTGAATAAGGTCCCCCTTTTCGAATCTATGGCGGGAGAAACATCATGGTTCATTCACTACCTTGATAATGCAACCAGGGAGAATAGACAGTTTGATTCATTTTTAGAACTTGGCGAGGAAAGTGATAAAGAAGTCACTGCTGTTTCTGCGGATAGTATTTTGCCTGATGACCTGTTGGAACGTATCCTAGCCTATCTTCCCATTGCAAGCATCTTCAGAGCAGGCTGCGTCTGTAAGAGATGGCATGAAATCGTTACCTCAAAGAGGTTTCTGTGGAACCTTTCACATGTGCTTCCGCAGAAACCTTGGTACTTTATGTTTACAAGCTTTGATGAGCCAACTGGTTATGCTCATGACCCCATCCTTCGGAAATGGTATGGCATTGAACTTCCCTGCATTGACACTTCTAATTGGTCCATTGCATCATCGTGTGGTTTAGTTTGCTTCATGGACAATGTCAATCGAAGTGAATTATACGTGTGCAACCCCATTACTAAAATCTTTAAGAAGCTTGAAGGGCCACCCGGTTCTGACTTCTCTGAGTACAGTGCATTGGCAATTTCAGTAAACAGAGTATCACAAAGTTACACAGTGGCGATTGTGAAATCCAAGGAAGTGCCTGAGAACTTCTTCCAATCTGTTATTTCAATTCATATATACAATTCAGAAGATAAGACCTGGGTGACCAGTTTAACAGAGGTTTTGATAGGGTGGAGAGGTGGTGATGAGAGTGTGATATGTAATGGGGTACTGTACTTTTTGGTTTATTCGACTGGGGGTGGTCATCCAGAAAATCGACATGCCCTCGTAGCATATAACATCACCAACCATGCATCTCAGCGATCCTTGGCAAGGAGCTTTATTCCAATACCTTGTCCTTTAACATGTGGTCGTCTGATGAATTTGAAGGATAAGCTTGTAATGGTGGGAGGTCTCGGTAAACTTGATCGCCCCGACATTATAAAAGGGATCGGTATATGGGTGCTAAACAACAGGAAATGGGACGAACTCGCTCGAATGCCTCACAAATTCTTCCAAGGATTTGGAGAGTTGGATGATGTCTTTGCTAGCAGTGGCACAGACGATCTAATATATATTCAAAGCTATGGAGCCTCAGCACTTCTCACATATGACATGAACCATAAACAATGGAAATGGTCACAGAAGTGTCCAGTGACAAAAAGATTTTCACTGCAGCTCTTCACTGGGTTTTGCTTTGAGCCCAGGCTTGAAATATCTCCATAG 1302 0.4324 MSMLTEFVRTHFRSDSGEALNKVPLFESMAGETSWFIHYLDNATRENRQFDSFLELGEESDKEVTAVSADSILPDDLLERILAYLPIASIFRAGCVCKRWHEIVTSKRFLWNLSHVLPQKPWYFMFTSFDEPTGYAHDPILRKWYGIELPCIDTSNWSIASSCGLVCFMDNVNRSELYVCNPITKIFKKLEGPPGSDFSEYSALAISVNRVSQSYTVAIVKSKEVPENFFQSVISIHIYNSEDKTWVTSLTEVLIGWRGGDESVICNGVLYFLVYSTGGGHPENRHALVAYNITNHASQRSLARSFIPIPCPLTCGRLMNLKDKLVMVGGLGKLDRPDIIKGIGIWVLNNRKWDELARMPHKFFQGFGELDDVFASSGTDDLIYIQSYGASALLTYDMNHKQWKWSQKCPVTKRFSLQLFTGFCFEPRLEISP 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1235 433 TIGRFAM F_box_assoc_1: F-box protein interaction domain 163 369 IPR017451 -
Lele41g1235 433 FunFam F-box/kelch-repeat protein At3g61590 66 113 - -
Lele41g1235 433 SUPERFAMILY Galactose oxidase, central domain 235 411 IPR011043 -
Lele41g1235 433 SMART fbox_2 73 113 IPR001810 GO:0005515
Lele41g1235 433 PANTHER F-BOX FAMILY PROTEIN 49 430 IPR045048 -
Lele41g1235 433 SUPERFAMILY F-box domain 71 170 IPR036047 GO:0005515
Lele41g1235 433 Pfam F-box domain 72 110 IPR001810 GO:0005515
Lele41g1235 433 ProSiteProfiles F-box domain profile. 67 114 IPR001810 GO:0005515
Lele41g1235 433 Gene3D - 123 420 IPR015915 GO:0005515
Lele41g1235 433 FunFam F-box/kelch-repeat protein At3g61590 family 119 417 - -
Lele41g1235 433 Gene3D - 64 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1235 Lele-ChrLele41 21227351 21231920 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1235 41 21227351 21231920 Lele41g1235 41 21227351 21231920 ECH
Lele41g1235 41 21227351 21231920 Lele43g0161 43 1506254 1511871 hybridization
Lele41g1235 41 21227351 21231920 Lele44g0162 44 1013127 1016123 hybridization