Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1308 ATGTCAATTTTACAATCAAAGACAAGGACATCATCTCCCAGAAGCAACTTCTTTGCCTATATAAAGCCCCCCCTGCTTCTCTTGTTCCTCCCCCCTCCTGCCTCTTCCTTCCTCCATTACCATTCATATCACTCTCCCCAATCTTTTTGCTTCTCCCTCTCAATCAATCCATCAATCAAACCAAATCACTCTTTCTTCTCTTTTGGTTCTCTTCTGTCTGAAATGGAGTACGAGGATCGCTTCAGACAGGCTCAGAGACCAAAATACGATTGCCTTCTTTTCGATTTAGATGATACTCTGTATCCTCTCAGTACTGGTCTTGCAAAAGCTTGCGGACAGAACATCAAAGATTACATGGTTGAGAAGCTTGGCATAGACAGAAACAAGATTGATGACTTGTCCAACCTTCTGTACAGGAACTATGGAACAACCATGGCTGGTCTTAGGGCAATTGGATATGACTTTGACTATGATGAATATCACAGTTTTGTCCATGGGAGATTGCCTTATGAGAACCTGAAACCAGACCCTGTTCTGAGGAACCTTTTGCTGAGCCTGCCATACAGGAAACTGATATTCACAAATGCAGACAAGGTGCATGCAGTGAAGGCACTGAGCAGACTTGGATTAGAGGATTGCTTTGAAGGGATTATATGTTTTGAGACTCTTAATCCCATCCACAAGAACAATGTTTCAGAAGATGAATTTGAGACCAACACAAATCCTACCACAAGTAATGGATCAGAAATCTTTGACATTATTGGACATTTTGCTCAACCCAATGCTGACACCTCAGTGTTGCCTAAGACCCCAATCATCTCCAAACCATCAGAACATGCCATTGAATTGGCTCTCAAGATTGCAAACCTTAACCCACAAAGAACTTTGTTCTTTGAGGATAGTGTCCGCAACATTCAAGCTGGGAAGCGTCTGGGCCTTGACACTGTACAGGTTGGTGCATCTCAGAGAGCAAAAGGAGCAGATTATGGGTTAGAAAGCATTCATAACCTTAGAGAGGCAGTGCCTGAGCTATGGGAAGCTGATATCAAATCAGAAGTTGCATACCCTGGAAAGCTTGCTGTGGAGACTTCTGTTACTGCCTAA 1104 0.4312 MSILQSKTRTSSPRSNFFAYIKPPLLLLFLPPPASSFLHYHSYHSPQSFCFSLSINPSIKPNHSFFSFGSLLSEMEYEDRFRQAQRPKYDCLLFDLDDTLYPLSTGLAKACGQNIKDYMVEKLGIDRNKIDDLSNLLYRNYGTTMAGLRAIGYDFDYDEYHSFVHGRLPYENLKPDPVLRNLLLSLPYRKLIFTNADKVHAVKALSRLGLEDCFEGIICFETLNPIHKNNVSEDEFETNTNPTTSNGSEIFDIIGHFAQPNADTSVLPKTPIISKPSEHAIELALKIANLNPQRTLFFEDSVRNIQAGKRLGLDTVQVGASQRAKGADYGLESIHNLREAVPELWEADIKSEVAYPGKLAVETSVTA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1308 367 SFLD C1.5.3: 5'-Nucleotidase Like 84 346 IPR010237 -
Lele43g1308 367 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 274 318 IPR006439 -
Lele43g1308 367 SUPERFAMILY HAD-like 88 345 IPR036412 -
Lele43g1308 367 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 90 317 IPR010237 -
Lele43g1308 367 Pfam Haloacid dehalogenase-like hydrolase 274 318 IPR041492 -
Lele43g1308 367 Gene3D - 172 352 IPR023214 -
Lele43g1308 367 SFLD Haloacid Dehalogenase 84 346 - -
Lele43g1308 367 Gene3D - 76 171 - -
Lele43g1308 367 CDD HAD_5NT 91 320 IPR010237 -
Lele43g1308 367 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 81 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1308 Lele-ChrLele43 21218091 21220427 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g0246 39 1643796 1647246 Lele43g1308 43 21218091 21220427 CCT
Lele43g1308 43 21218091 21220427 Lele43g1308 43 21218091 21220427 ECH
Lele41g0052 41 373741 376281 Lele43g1308 43 21218091 21220427 hybridization
Lele42g0053 42 394884 397257 Lele43g1308 43 21218091 21220427 hybridization