Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0446 ATGAACGGTGGCGATGAGGTCATCGCAGCTCCGGCGGGTCCACCCCAGCCGCTGGAGTGGAAATTCTCGCAGGTTTTTGGTGAACGTACGGCCGGGGAGGAGGTTCAGGAAGTGGACATAATTTCTGCCATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGTGGTGGTCGAGTAGTTCTATTTGAGAGGACAGATACGAAAGATCATGGAGGATCAAGAAGGGATTTGGAAGGGATGGATTATACAATAATTAGGCATCCTGAGTTCCGATATAAAACTGAGTTTCAGAGTCATGAACCTGAGTTCGATTATCTAAAGAGCTTGGAAATTGAAGAGAAAATAAACAAAATCAGATGGTGCCAAACAGCTAATGGTGCCTTGTTTCTTCTATCTACAAATGATAAAACCATCAAATATTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATATCGGAGATGAATGTTGACCCGTCCAAAGCAATGGCAAATGGCTGTATCAGCAGTATTGCGAGTTCAAGTAATTCAAGTAGCCCTAGGCCATATCTTGCAAATGGAGGATCTCCAGATAAATTATACCTGACCAATGACCTCTCATTTCCACCTGGGGGCATCCCATCGTTAAGATTACCTGTGGTAACCAGCCATGAAACCAGCCTCGTAGCTCGATGTCGTAGGGTGTATGCCCATGCTCATGATTATCATATCAATTCTATATCAAGTAACAGTGATGGCGAAACTTTCATATCTGCTGATGATTTGCGGATAAATCTGTGGAACCTAGAAATTAGCAACCAAAGTTTTAATATTGTAGATGTAAAGCCTGCAAACATGGAGGATCTAACTGAGGTGATAACGTCAGCAGAGTTTCACCCTACCCATTGTAATATGTTGGCCTATAGCAGTTCAAAGGGTTCAATCCGTCTTGTTGATCTGCGTCAATCAGCATTGTGTGATAGTCATGCCAAATTGTTTGAGGAACAGGAGGCCCCTGGGTCCAGATCCTTTTTTACAGAGATTATTGCTTCGATTTCAGATATAAAATTTGGGAAGGAGGGAAGATACATACTTAGTCGTGATTACATGACTCTAAAGTTATGGGACATTAATATGGATTCTGGTCCAGTTGCAACTTTCCAGGTTCATGAATATCTAAGACCTAAGCTATGTGACTTATATGAAAATGATTCAATTTTTGATAAGTTCGAGTGTTGTTTGAGTGGCGATGGGTTGCATGTAGCAACTGGTTCATACAGCAACCTATTCCGTGTGTTTGGCTGCATCCCAGGAAATACTGAGGCTACAACCTTAGAAGCCAGTAAAAATCCAATGAGGCGACAAGTTCAGACCCCTGCAAGGCCAGCTAGATCATTGGGAAGCAGTTTAACTCGAGTTGTAAGGCGAGGAGCTGATAGTCCGGGTGTTGATGCAAATGGGAACACTTTTGATTTCACTACAAAGTTGCTGCACTTAGCATGGCACCCGACGGAACATTCGATTGCCTGTGCTGCTGCAAATAGTTTGTACATGTACTATGCATAA 1551 0.4268 MNGGDEVIAAPAGPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRRDLEGMDYTIIRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKYWKVQEKKVKKISEMNVDPSKAMANGCISSIASSSNSSSPRPYLANGGSPDKLYLTNDLSFPPGGIPSLRLPVVTSHETSLVARCRRVYAHAHDYHINSISSNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKEGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLHVATGSYSNLFRVFGCIPGNTEATTLEASKNPMRRQVQTPARPARSLGSSLTRVVRRGADSPGVDANGNTFDFTTKLLHLAWHPTEHSIACAAANSLYMYYA 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0446 516 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 15 516 IPR000009 GO:0000159|GO:0019888
Lele43g0446 516 SMART WD40_4 375 429 IPR001680 GO:0005515
Lele43g0446 516 SMART WD40_4 105 145 IPR001680 GO:0005515
Lele43g0446 516 SMART WD40_4 274 314 IPR001680 GO:0005515
Lele43g0446 516 SMART WD40_4 31 66 IPR001680 GO:0005515
Lele43g0446 516 SMART WD40_4 224 263 IPR001680 GO:0005515
Lele43g0446 516 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 210 512 - -
Lele43g0446 516 PIRSF PPA2_B55 11 516 IPR000009 GO:0000159|GO:0019888
Lele43g0446 516 Gene3D - 323 511 IPR015943 GO:0005515
Lele43g0446 516 Gene3D - 35 199 IPR015943 GO:0005515
Lele43g0446 516 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Lele43g0446 516 Gene3D - 224 322 IPR015943 GO:0005515
Lele43g0446 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Lele43g0446 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Lele43g0446 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 402 428 IPR000009 GO:0000159|GO:0019888
Lele43g0446 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Lele43g0446 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 348 375 IPR000009 GO:0000159|GO:0019888
Lele43g0446 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 235 262 IPR000009 GO:0000159|GO:0019888
Lele43g0446 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 291 319 IPR000009 GO:0000159|GO:0019888
Lele43g0446 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 485 514 IPR000009 GO:0000159|GO:0019888
Lele43g0446 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 376 401 IPR000009 GO:0000159|GO:0019888
Lele43g0446 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 263 290 IPR000009 GO:0000159|GO:0019888
Lele43g0446 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 320 347 IPR000009 GO:0000159|GO:0019888
Lele43g0446 516 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 199 - -
Lele43g0446 516 Pfam WD domain, G-beta repeat 227 263 IPR001680 GO:0005515
Lele43g0446 516 SUPERFAMILY WD40 repeat-like 39 507 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0446 Lele-ChrLele43 3910300 3917361 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0446 43 3910300 3917361 Lele37g0337 37 2823430 2826498 CCT
Lele43g0446 43 3910300 3917361 Lele39g1088 39 19457280 19460400 CCT
Lele41g0951 41 19011887 19018965 Lele43g0446 43 3910300 3917361 hybridization
Lele42g0920 42 21935290 21942418 Lele43g0446 43 3910300 3917361 hybridization