Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g0161 ATGCTAGACCTCGATCGCCAGTCACCACCTTACCAACCGATTGAGCATTGGAGCTCCAGTCTGTCTGATCAGACTTCCAGCAATATTTGTTTGGTGCCAAAGGGTAGTGGCCAGGGACAGAGGGCTAGTACCAGCAGAGCTTCGATAGTCGGCTTGAGAGGAGCCTGGTCTTGATGTTTACTTGATGGGTATTTGCCATTTGTTTCCCTCTTCCTCATCTTTGTTTTGGAGACTAGAGAGTTTGATTCATTTTTAGAACTTGGTGAGGAAAGCGATAAAGAAGTCACTGCCGTTTCTATGGATAGTATTTTGCCTGATGACCTGTTGGAACGTATCCTAGCCTATCTTCCCACTGCAAGCATCTTCAGAGCAGGCTGTGTCTGTAAGAGATGGCATGAAATCGTTACCTCGAAGAGGTTTCTGTGGAACCTTTCACATATGCTTCCGCAGAAACCTTGGTACTTTATGTTTACAAGCTTTGATGAGCCAACTGGTTATGCTTATGACCCCATCCTTCGGAAATGGTATGGCATTGAACCTCCCTGCATTGACACTTCTAATTGGTTTACTGCATCATCGAATGGTTTAGTTTGCTGCATGGACAATGACAATCGAAGTGAATTATACGTGTGCAACCCCATTACTAAAATCTTTAAGAAGCTTGAAGGGCCACCCGGTTCTAACTTCTCTGAGTACAGTGCATTGGCAATTTCAGTAAACAGAGTATCACAAAGCTACACAGTGGCGATTGTGAATTCCAAGGAAGTGCCTGAGAACTTCTCCCAATCTGTTATTTCAATTCATAAATACAATTCAGAAGATAAGACCTGGGTGACCAGTTTAACAGAGGTTTTGATAGGGTGGAGAGGTGGTGATGAGAGTGTGATATGTAATGGGGTGCTGTACTTTTTGGTTTATTCGACTGGGGGTGGTCATCCAGAAAATCGACATGCCCTCCTAGCATATAACATTGCCAACCATGTGTCTCAGCGATCCTTGACAAGGAGCTTTATTCGAATACCTTGTCCTTTAACATGTGGTCGTCTGATGAATTTGAAGGATAAGCTTGTAATGGTGGGAGGTCTCAGTAAACTTGATCGCCCCGACATTATAAAAGGGATCGGTATATGGGTGCTAAACAACAGGAAATGGGACGAACTCGCCCGAATGCCTCACAAATTCTTCCAAGGATTTGGAGAGTTGGATGATGTCTTTGCTAGCAGTGGTACAGACGATCTAATATATATTCAAAGCTATGGAGCCTCAGCACTTCTCACATATGACATGAACCATAAACAATGGAAATGGTCACAGAAGTGTCCAGTGACAAAAAGATTTTCACTGCAGCTCTTCACTGGGTTTTGCTTTGAGCCCAGGCTTGAAATTTCTCCATAG 1395 0.4373 MLDLDRQSPPYQPIEHWSSSLSDQTSSNICLVPKGSGQGQRASTSRASIVGLRGAWSXCLLDGYLPFVSLFLIFVLETREFDSFLELGEESDKEVTAVSMDSILPDDLLERILAYLPTASIFRAGCVCKRWHEIVTSKRFLWNLSHMLPQKPWYFMFTSFDEPTGYAYDPILRKWYGIEPPCIDTSNWFTASSNGLVCCMDNDNRSELYVCNPITKIFKKLEGPPGSNFSEYSALAISVNRVSQSYTVAIVNSKEVPENFSQSVISIHKYNSEDKTWVTSLTEVLIGWRGGDESVICNGVLYFLVYSTGGGHPENRHALLAYNIANHVSQRSLTRSFIRIPCPLTCGRLMNLKDKLVMVGGLSKLDRPDIIKGIGIWVLNNRKWDELARMPHKFFQGFGELDDVFASSGTDDLIYIQSYGASALLTYDMNHKQWKWSQKCPVTKRFSLQLFTGFCFEPRLEISP 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g0161 464 Gene3D - 93 144 - -
Lele43g0161 464 FunFam F-box/kelch-repeat protein At3g61590 97 144 - -
Lele43g0161 464 Gene3D - 195 453 IPR015915 GO:0005515
Lele43g0161 464 ProSiteProfiles F-box domain profile. 98 145 IPR001810 GO:0005515
Lele43g0161 464 SUPERFAMILY F-box domain 97 205 IPR036047 GO:0005515
Lele43g0161 464 Pfam F-box-like 104 143 IPR001810 GO:0005515
Lele43g0161 464 PANTHER F-BOX FAMILY PROTEIN 91 461 IPR045048 -
Lele43g0161 464 SUPERFAMILY Galactose oxidase, central domain 165 442 IPR011043 -
Lele43g0161 464 TIGRFAM F_box_assoc_1: F-box protein interaction domain 194 400 IPR017451 -
Lele43g0161 464 FunFam F-box/kelch-repeat protein At3g61590 family 150 448 - -
Lele43g0161 464 SMART fbox_2 104 144 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g0161 Lele-ChrLele43 1506254 1511871 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g0161 43 1506254 1511871 Lele43g0161 43 1506254 1511871 ECH
Lele41g1235 41 21227351 21231920 Lele43g0161 43 1506254 1511871 hybridization
Lele42g1191 42 24165023 24166240 Lele43g0161 43 1506254 1511871 hybridization