Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1233 ATGTTTTGCCTCGCTGCTTCAAACCAAATTATCCTGGCTCTTATTTTTAGTGCCTCAACCACAGTCCGAGGTGATGCCTTACATCTTGAACCTGCCTATGTAAATTGCACCGTAAGTAACAAGGATCAGCCTTCATCTAAGGATGACAATTCTGATCATCACGTGGACTTTGCTGCTGGGAATGTACAACTTATTACTTCCAAAGAATCTTGGGACCAGAAGATGGAAGAAGCAAGAAAGGATGGCAAAATTGTGATTGCAAACTTCAGTGCATCATGGTGCGGTCCATGTAAGATGATATCGCCTTATTTCTGTGAGTTATCGGAGAAATATCCATCAATTATGTTCTTTGTAATTGACGGGGATGAACTCACTGACTTCAGCGCTTCCTTGGATATCAAAGCCACTCCAACTTTCTTCTTTCTCAGAGATGGGAAACAGATTGACAAACTGGTAGGAGCCAACAAGCCTGAGCTGCTGAAGAAAATTGTTGCCATTACTGATTCAATAGTTCAGGAAAACGTGCTCAATCGTAAGAATTTTAGTAACAAATGGGTTGAAAAACGGAAAAGAGGCAGCAGCTATTTCTTTGTCACTAGTCGTTGGGGCCATCTAGGACAAGTGATACAAAAGCTTCACAATCACAAAAGACATCTCTCCATTTGCTTTCCTGAGAATTCAGATCCACCTCTTGCTTTCTTCTTCTTCTTCTACTTTTCTTTTTCATCGACGCAAAACCAGCCTCTCCACAAGCTCTTCCCATACAACATATGGATTCACACATTCACAGGGTATGGACACCCTGGTTCGATGATCAGCTCTATGGATCCCCACAAGAGTTTTGGATTATTATGCACTGTTTCTTTCATCCTCTTTTTGATTCTTACTAAGGATCTAAGTTGCTCTGCACTTGGTGGCAGTGAACAAGACGAAACGGGAATCATTGAGGATGAGTATGAGGCAGTCCACAATCAGATAGCTGATCCTATCTCAACTTATGTGAATGAAATGGAGGACATCGAAGAAGAAGAATGGGAGATGGTACAGAAGAAAGGAAACCAGTTTGTGATGAATGATGAACCATTTTATGTGAATGGGTTTAACACATACTGGCTGATGGTGTTTGCAGCAGATGAGTCCACCAGAGGAAAAGTCAGCGAAGTGTTCAAACAAGCAGCCTCAGTGGGAATGACTGTTTGTAGGACTTGGGCCTTCAATGATGGCCAATGGAGAGCCCTTCAGAAATCCCCATCATTTTATGATGAAGAAGTCTTCAAGGCCTTGGACTTTGTGGTAAGTGAAGCAAGGAAATACAAAGTAAGGCTCATATTGTCATTGACTAATAACTGGGAGGCATATGGTGGCAAAGCACAATATGTGAAATGGGGCAAAGCTGCTGGCCTTAACTTGACCTCTGATGATGACTTCTTCTCACATCCAACTCTTAGAAGCTACTACAAGGCCCACACGGTGTTGAATAGGGTTAATACATTCACAAGCATCACTTACAAGAATGACCCCACAATTTTTTCTTGGGAACTCATGAATGAGCCTCGTTGCACCTCAGATCCTACTGGCGATCTATTACAGGATTGGATACAAGAAATGGCAGTGTATGTGAAGAGCATTGATCCGAAGCACCTTGTGGAGATTGGATTAGAAGGATTTTATGGCCCTTCAACTCCGCAGAGAGTTCAGTTCAATCCAAACACATATGCTCAGCAAGTTGGAACAGATTTCGTCAGAAACCACCAAGTTCTTGGTGTTGACTTCGCTTCTGTTCACATGTATCCAGACTCTTGGATTTCTCAAGCAATTTCTGATACGCATCTCCCATTTGTGACATCTTGGATGGAAGCCCACATAGAGGATGCTGAAAAGTATCTTGGAATGCCGGTGGTTTTTGCTGAGTTTGGAGTATCTGCAAAAGATCCTGGCTACAATTCAACATACAGAGACAACCTTATAAGCACAGTGTACAAGGCAATCTTAAACTCCACGAAGAAAGGAGGGAGTGGAGCTGGAAGCCTGCTATGGCAGGTGTTTCCTGATGGAACAGATTATATGGATGATGGGTATGCAATTGTGCTTTCAAAGTCTACTTCCACCTCAAGCATTATATCTCTTCAATCCACAAGGCTTGCCCTGTTCAACTCCAGGTGTTCTTGGAAATGCCACTGGGGTTGTAAGAAGAAAAGGGAACTGGAAAGAATAATCTTTCATGATGAACTCTGA 2235 0.4251 MFCLAASNQIILALIFSASTTVRGDALHLEPAYVNCTVSNKDQPSSKDDNSDHHVDFAAGNVQLITSKESWDQKMEEARKDGKIVIANFSASWCGPCKMISPYFCELSEKYPSIMFFVIDGDELTDFSASLDIKATPTFFFLRDGKQIDKLVGANKPELLKKIVAITDSIVQENVLNRKNFSNKWVEKRKRGSSYFFVTSRWGHLGQVIQKLHNHKRHLSICFPENSDPPLAFFFFFYFSFSSTQNQPLHKLFPYNIWIHTFTGYGHPGSMISSMDPHKSFGLLCTVSFILFLILTKDLSCSALGGSEQDETGIIEDEYEAVHNQIADPISTYVNEMEDIEEEEWEMVQKKGNQFVMNDEPFYVNGFNTYWLMVFAADESTRGKVSEVFKQAASVGMTVCRTWAFNDGQWRALQKSPSFYDEEVFKALDFVVSEARKYKVRLILSLTNNWEAYGGKAQYVKWGKAAGLNLTSDDDFFSHPTLRSYYKAHTVLNRVNTFTSITYKNDPTIFSWELMNEPRCTSDPTGDLLQDWIQEMAVYVKSIDPKHLVEIGLEGFYGPSTPQRVQFNPNTYAQQVGTDFVRNHQVLGVDFASVHMYPDSWISQAISDTHLPFVTSWMEAHIEDAEKYLGMPVVFAEFGVSAKDPGYNSTYRDNLISTVYKAILNSTKKGGSGAGSLLWQVFPDGTDYMDDGYAIVLSKSTSTSSIISLQSTRLALFNSRCSWKCHWGCKKKRELERIIFHDEL 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1233 744 SUPERFAMILY (Trans)glycosidases 348 702 IPR017853 -
Lele40g1233 744 Pfam Cellulase (glycosyl hydrolase family 5) 359 659 IPR001547 GO:0004553|GO:0071704
Lele40g1233 744 Gene3D Glycosidases 345 717 - -
Lele40g1233 744 FunFam Thioredoxin 59 168 - -
Lele40g1233 744 FunFam Mannan endo-1,4-beta-mannosidase 6 344 718 - -
Lele40g1233 744 Gene3D Glutaredoxin 36 174 - -
Lele40g1233 744 PANTHER - 287 735 IPR045053 GO:0004553
Lele40g1233 744 ProSiteProfiles Thioredoxin domain profile. 53 168 IPR013766 -
Lele40g1233 744 SUPERFAMILY Thioredoxin-like 58 163 IPR036249 -
Lele40g1233 744 ProSitePatterns Thioredoxin family active site. 86 104 IPR017937 -
Lele40g1233 744 CDD TRX_family 69 165 - -
Lele40g1233 744 Pfam Thioredoxin 65 163 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1233 Lele-ChrLele40 22120833 22128602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g1233 338 744 Glycoside Hydrolase AT5G01930 73.966 0.0 676
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1409 37 22817954 22824376 Lele40g1233 40 22120833 22128602 hybridization
Lele38g1285 38 23613593 23618620 Lele40g1233 40 22120833 22128602 hybridization