Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g1409 ATGGGGAACTGCATGGCTCGGCCTTCATCCAAGGATGACAATTCTGATCATCACGTGGACTTTGCTGCTGGGAATGCACAACTTATTACTTCCAAAGAATCTTGGGACCAGAAGATGGAAGAAGCAAGAAAGGATGGCAAAATTGTGATTGCAAACTTCAGTGCATCATGGTGCGGTCCATGTAAGATGATTGCGCCTTATTTCTGTGAGTTAGCGGAGAAATATCCATCAATTATGTTCTTAGTAATTGACGTGGATGAACTCACTGACTTCAGCACTTCCTGGGATATCAAAGCCACTCCAACTTTCTTCTTTCTCAGAGATGGGAAACAGATTGACAAACTGGTAGGAGCCAACAAGCCTGAGCTGCTGAAGAAAATTGTTGCCATTAATGATTCAATAGAGAAGCGATACAAAAGCTTCACAATCACTAAAGACATTTCTCCATTTGCTTACCTGAGAATTCAGATCCACATCTTGCCTTCTTCTTCTTCTACTTTTCTTTCTCTTCAACTCAAAACCAACCTCCCCACAAGCTCTTCCCATAGAAGATATGGGAGTGAAATGAAGGACATGGAAGAAGAAGAATGGGAGATGGTACAGAAGAAAGGAAACCAGTTTGTCGTGAATGATGAGCCATTTTATGTGAATGGGTTTAATACATACCGGCTGATACTGTTTGCAGCAGATGAATCCACGAGAGGCAAAGTCAGTGAAGTGTTCAAACAAGCAGCCTCAGTGGGAATGACTGTTTGTAGGACTTGGGCCTTCAATGATGGCCAATGGAGGGCCCTTAAGAAATCCCCATCAGTTTATGATGAAGAAGTGTTCAAGGCCTTGGACTTTGTGACGATGTTGAATAGTGTTAATACATTCACAAACATTACTTACAAGAACGAACCCACAATTTTTGCTTGGGAACTCATGAATGAGCCTCGATGCACCTCAGATCCTACAGGCGATCTATTACAGGATGGGATACAAGAAATGGCAGTGTATGTGAAGAGCATTGATCCAAAGCACCTTGTAGAGATTGGATTAGAAGGGTTTTATGGCCCTTCAACTCCGCAGAGAGTTCAGTTCAATCGAAACACATATGCTCAGCAAGTTGGAACAGATATCATCAGAAACCACCAAGTTCTTGGTGTTGACTTCGCATCTGTTCACATGTATCCAGACTCTTGGATTTCTCAAGCAATTTCTGATACGCATCTCCCATTTGTGACATCTTGGATGGAAGCCCACATAGAGGATGCTGAGAAGTATCTTGGAATGCCGGTGGTATTTGCTGAGTTTGGAGTATCTGCAAAAGATCCTGGTTACAATTCAACATACAGAGACAACCTTATAAGCACAGTGTACAAGGCAATCTTAAACTCCACGAAGAAAGGAGTGAGTGGAGCTGGAAGCCTGCTATGGCAGGTGTTTCCTGACGGAACAGATTATATGGATGATGGGTATGCAATTGTGCTTTCAAAGTCTGCTTCCACCTCAAGCATTATATCGCTTCAATCCACAAGGCTTGCCCTGTTCAACTCCAGGTGTTCTTGGAAATGCCACTGGGGTTGTAAGAAGAAGGAACTGAAAAGATTAATCTATCATGATGAACTCTGA 1614 0.4269 MGNCMARPSSKDDNSDHHVDFAAGNAQLITSKESWDQKMEEARKDGKIVIANFSASWCGPCKMIAPYFCELAEKYPSIMFLVIDVDELTDFSTSWDIKATPTFFFLRDGKQIDKLVGANKPELLKKIVAINDSIEKRYKSFTITKDISPFAYLRIQIHILPSSSSTFLSLQLKTNLPTSSSHRRYGSEMKDMEEEEWEMVQKKGNQFVVNDEPFYVNGFNTYRLILFAADESTRGKVSEVFKQAASVGMTVCRTWAFNDGQWRALKKSPSVYDEEVFKALDFVTMLNSVNTFTNITYKNEPTIFAWELMNEPRCTSDPTGDLLQDGIQEMAVYVKSIDPKHLVEIGLEGFYGPSTPQRVQFNRNTYAQQVGTDIIRNHQVLGVDFASVHMYPDSWISQAISDTHLPFVTSWMEAHIEDAEKYLGMPVVFAEFGVSAKDPGYNSTYRDNLISTVYKAILNSTKKGVSGAGSLLWQVFPDGTDYMDDGYAIVLSKSASTSSIISLQSTRLALFNSRCSWKCHWGCKKKELKRLIYHDEL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g1409 537 FunFam Thioredoxin 23 132 - -
Lele37g1409 537 Pfam Thioredoxin 29 127 IPR013766 -
Lele37g1409 537 SUPERFAMILY Thioredoxin-like 24 128 IPR036249 -
Lele37g1409 537 Pfam Cellulase (glycosyl hydrolase family 5) 229 453 IPR001547 GO:0004553|GO:0071704
Lele37g1409 537 Gene3D Glycosidases 197 283 - -
Lele37g1409 537 Gene3D Glycosidases 284 511 - -
Lele37g1409 537 ProSitePatterns Thioredoxin family active site. 50 68 IPR017937 -
Lele37g1409 537 SUPERFAMILY (Trans)glycosidases 200 495 IPR017853 -
Lele37g1409 537 FunFam Uncharacterized protein 327 512 - -
Lele37g1409 537 Gene3D Glutaredoxin 1 137 - -
Lele37g1409 537 PANTHER - 284 528 IPR045053 GO:0004553
Lele37g1409 537 ProSiteProfiles Thioredoxin domain profile. 6 132 IPR013766 -
Lele37g1409 537 CDD TRX_family 33 129 - -
Lele37g1409 537 Coils Coil 25 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g1409 Lele-ChrLele37 22817954 22824376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele37g1409 194 537 Glycoside Hydrolase AT5G01930 61.179 1.18e-179 511
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1409 37 22817954 22824376 Lele39g0015 39 120452 123267 hybridization
Lele37g1409 37 22817954 22824376 Lele40g1233 40 22120833 22128602 hybridization