Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1285 ATGGGGAACTGCATGGCTCGGGTGAGAATGTTTGGATATTTTAATCAGAATCTAGGTAGTTGTGCTCATTCTATGTTTAAGGCATTAGGTCTATCTTGCTCTCTTACATGCTCCGTGATTGCAAACTTCAGTGCATCATGGTGCTGTCCATGTAAGATGATATCGCCCTATTTCTGCGAGTTATCGGAGAAATATCCATCAATTATGTTCTTAGTAATTGACGTGGATGAACTCACTGACTTCAGCACTTCCTTGGATATCAAAGCCACTCCAACTTTCTCAGAGATGGGAAACAGATTGACAAACTGGAAGGTAGAGGATGAAACTGTAAAATCGGGATCAATCAGATCGTTTCATTTACACAGAATTTTAGTAACAAATGGGTTGAAAAACGGAAAAGGTGGAGAAGGCGTAACTGATCCGAGAGGCAGCAGCTATTTCTTTGTCACTATTCGTTGGGCCCATCTAGGACAAGTGATACAAAAGCTTCACAGTCACAAAAGACATTTCTCCATTTGCTTTCCTGAGAATTCAGATCCACCTCTTGCTTTCTTCTTCTTCTACTTTTCTTTTTCATCAACTCAAAACCAGCCTCTCCACAAGCTTTTCTCATACAAGATATGGATTCACACATTCACAGGGTATGTACACCCTGGTTCTTTGATCAGCTCTATGGATCCCCACAAGAGTTTTGGATTATTACGCGCTGTTTCTTTCATCCTCTTTTTGATTCTTACTAAGGATCTAAGTTGCTCTGCACTTGGTGGCAGTGAACAAGACGAAACGGGAATCATTGAGGATGAGTATGAGGCAGCCCACAATCAGATAGCTGATCCTATCTCAACTTATGTGAGTGAAATGGAGGACATGGAAGAAGAAGAATGGGAGATGGTACAGAAGAAAGGAAACCAGTTTGTGGTGAATGATGAGCCATTTTATGTGAATGGGTTTAACACATACTGGCTGATGGTGTTTGCAGCAGATGAGTCCACCAGAGGAAAAGTCAGCGAAGTGTTCAAACAAGCAGCCTCAGTGGGAATGACCGTTTGTAGGACTTGGGCCTTCAATGATGGCCAGTGGAGAGCCCTTCAGAAATCCCCATCAGTTTATGATGAAGAAGTCTTCAAGGCCTTGGACTTTGTGGTAAGTGAAGCAAGGAAATACAAAATAAGGCTCATATTATCATTGACTAATAACTGGGAGGCATATGGTGGCAAAGAACAATATGTGAAATGGGGCAAAGCTGCTGGCCTTAACTTGACCTCTGATGATGATTTCTTCTCACATCCAACTCTTAGAAGCTACTACAAGGCCCATGTCAAGACGGTGTTGAATAGGGTTAATACATTCACAAGCATCACTTACAAGAATGACCCCACAATTTTTGCTTGGGAACTCATGAATGAGCCTCGTTGCACCTCAGATCCTACTGGCGATCTATTACAGGATTGGATACAAGAAATGGCAGTGTATGTGAAGAGCATTGATCCGAAGCACCTTGTGGAGATTGGATTGGAAGGATTTTATGGCCCTTCAACTCCGCAGAGAGTTCAGTTCAATCCAAACACATATGCTCAGCAAGTTGGAACAGATTTCATCAGAAACCACCAAGTTCTTGGTGTTGACTTCGCTTCTGTTCACATGTATCCAGACTCTTGGATTTCTCAAGCAATTTCTGATATGCATCTCCCATTTGTGACATCTTGGATGGAAGCCCACATAGAGGATGCTGAAAAGTATCTTGGAATGCCGGTGGTTTTTGCTGAGTTTGGAGTATCTGCAAAGGATCCTGGCTACAATTCAACATACAGAGACAACCTTATAAGCACAGTGTACAAGGCAATCTTAAACTCCACGAAGAAAGGAGGGAGTGGAGCTGGAAGCCTGCTATGGCAGGTGTTTCCTGATGGAACAGATTATATGGATGATGGGTATGCAATTGTTCTTTCAAAGTCTACTTCCACCTCAAGCATTATATCTCTTCAATCCACAAGGCTTGCCCTGTTCAACTCCAAGTGTTCTTGGAAATGCCACTGGGGTTGTAAGAAGAAAAGGGAACTGGAAAGAATAATCTATCATGATGAACTCTGA 2091 0.4237 MGNCMARVRMFGYFNQNLGSCAHSMFKALGLSCSLTCSVIANFSASWCCPCKMISPYFCELSEKYPSIMFLVIDVDELTDFSTSLDIKATPTFSEMGNRLTNWKVEDETVKSGSIRSFHLHRILVTNGLKNGKGGEGVTDPRGSSYFFVTIRWAHLGQVIQKLHSHKRHFSICFPENSDPPLAFFFFYFSFSSTQNQPLHKLFSYKIWIHTFTGYVHPGSLISSMDPHKSFGLLRAVSFILFLILTKDLSCSALGGSEQDETGIIEDEYEAAHNQIADPISTYVSEMEDMEEEEWEMVQKKGNQFVVNDEPFYVNGFNTYWLMVFAADESTRGKVSEVFKQAASVGMTVCRTWAFNDGQWRALQKSPSVYDEEVFKALDFVVSEARKYKIRLILSLTNNWEAYGGKEQYVKWGKAAGLNLTSDDDFFSHPTLRSYYKAHVKTVLNRVNTFTSITYKNDPTIFAWELMNEPRCTSDPTGDLLQDWIQEMAVYVKSIDPKHLVEIGLEGFYGPSTPQRVQFNPNTYAQQVGTDFIRNHQVLGVDFASVHMYPDSWISQAISDMHLPFVTSWMEAHIEDAEKYLGMPVVFAEFGVSAKDPGYNSTYRDNLISTVYKAILNSTKKGGSGAGSLLWQVFPDGTDYMDDGYAIVLSKSTSTSSIISLQSTRLALFNSKCSWKCHWGCKKKRELERIIYHDEL 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1285 696 Pfam Thioredoxin 38 94 IPR013766 -
Lele38g1285 696 CDD TRX_family 39 93 - -
Lele38g1285 696 PANTHER - 238 687 IPR045053 GO:0004553
Lele38g1285 696 SUPERFAMILY (Trans)glycosidases 298 654 IPR017853 -
Lele38g1285 696 FunFam Mannan endo-1,4-beta-mannosidase 6 294 670 - -
Lele38g1285 696 Gene3D Glutaredoxin 34 106 - -
Lele38g1285 696 SUPERFAMILY Thioredoxin-like 39 93 IPR036249 -
Lele38g1285 696 Gene3D Glycosidases 295 669 - -
Lele38g1285 696 Pfam Cellulase (glycosyl hydrolase family 5) 309 611 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1285 Lele-ChrLele38 23613593 23618620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1285 288 696 Glycoside Hydrolase AT5G01930 74.939 0.0 683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g1285 38 23613593 23618620 Lele39g0015 39 120452 123267 hybridization
Lele38g1285 38 23613593 23618620 Lele40g1233 40 22120833 22128602 hybridization