Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1127 ATGGAAGCTCTCAAGAGTTCTTGCTCTAAGGCCCCTTTTGATGGCCTTGGATCTTCTTCTCCGAGGCTTGTTTCTTTCTTTCATTTCTCCGACAGGCTTCAATTTTCCTTATCCAATGATAAAGTCGGCAACTTTAGGTTCCTTCAAATGGTTCAAAACAAGGGTGTCTCGATTTCCCCAGTTCATGCCATGCCATCCGAACCCCAGTGGATAGGATCAATGGAAATAAATCAGGATGAGCCTGCTGGGAAATCAATTCAATACAAGTTTATTCTGAAATCAACATCTGGAGATATTATTTGGCAGCCGGGGTCCGACCGAATTGTGAAGACTTGGGAAACTGTTAACAGAATAACTGTTTGTGAGGATTGGGAGAATGCTGAGCTTCAGAAAATAATAGAGGAAGATCAATCTGATTACTCAAATGGGGAACCCCTGATTGATTCAGAAATGTCAAATTTTTCTGAAGAAGAGACGGTATCTGATGCAACCGATGTACTAGACTTTGAAGGCATCAAAACTCATTTAGAGGAGAAACCACTTGGTCAACCAGACGTGCAACAAATTATAGGTGATAATGCTTCTTCTTCTTCTTCTTTCATGGAGAAGCCAATGGCTATTGTTGCAGAAAATATAGATTCATCAGAAGACGCCCCTAAGAATGCGCCTCGCAGAAGAGGTGTGAACAATATGGCTCTTCAGAGTGAAGTTACAGTTCATGATCTTGAAAACATGGGAAAAGCTTCACAAGTCAATAATCAGGAAAAGGAAGTTGTGAAGAGCAACCTATTTGAATTTGAAGGAAGTCCTGTTCTTGTACCTGGCTTGACTCCACCTAAATCTGAAGAAACAACTAATAACAATAAAGTTGAAGAGAGGACTACCATGGACACTTCAGTTCAAGAAATTGAAACCAAGGATCAGAACAGGCCAGAGTTCAATGAGGAACTAGAAGAATCAGATGACGGGGTCCAGGTCAATGAAGAGGACCAAGAAGAATCAGAAGATGGTAAACCCCAAGAGATGTCTGAAACACTCAGTGAAGAGCCAGAGTTGGTTGACAATGAATTTCAAGAGAAGTTTCGTTCAACAACAGCAATAGTTAAAGTTCCTGAGGTTCACACGGCTCATGAAAATGTCTTGGAAAGTCCCATTCAATGGGGCCGCGGAATATTAAAGAAGCTTCTATCAAAACTCGGATCGCTGAGAAAAATTCTTCAGTAG 1224 0.4118 MEALKSSCSKAPFDGLGSSSPRLVSFFHFSDRLQFSLSNDKVGNFRFLQMVQNKGVSISPVHAMPSEPQWIGSMEINQDEPAGKSIQYKFILKSTSGDIIWQPGSDRIVKTWETVNRITVCEDWENAELQKIIEEDQSDYSNGEPLIDSEMSNFSEEETVSDATDVLDFEGIKTHLEEKPLGQPDVQQIIGDNASSSSSFMEKPMAIVAENIDSSEDAPKNAPRRRGVNNMALQSEVTVHDLENMGKASQVNNQEKEVVKSNLFEFEGSPVLVPGLTPPKSEETTNNNKVEERTTMDTSVQEIETKDQNRPEFNEELEESDDGVQVNEEDQEESEDGKPQEMSETLSEEPELVDNEFQEKFRSTTAIVKVPEVHTAHENVLESPIQWGRGILKKLLSKLGSLRKILQ 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1127 407 Pfam Starch binding domain 54 116 IPR002044 GO:2001070
Lele40g1127 407 Gene3D Immunoglobulins 40 125 IPR013783 -
Lele40g1127 407 SUPERFAMILY Starch-binding domain-like 53 123 IPR013784 GO:0030246
Lele40g1127 407 MobiDBLite consensus disorder prediction 285 313 - -
Lele40g1127 407 MobiDBLite consensus disorder prediction 269 352 - -
Lele40g1127 407 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 16 126 IPR002044 GO:2001070
Lele40g1127 407 MobiDBLite consensus disorder prediction 314 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1127 Lele-ChrLele40 21395306 21398162 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1286 37 22033377 22036445 Lele40g1127 40 21395306 21398162 hybridization
Lele38g1187 38 22901041 22903788 Lele40g1127 40 21395306 21398162 hybridization