LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele40g0934	ATGATTTTGGAAGGAGTTAGGCCCGATAGTTCCATTTTTACAGTGGCATTGAAGGCTTGTACTAGGTTGCTTGATTTGAAAATGGGGAAGGAGATTTGGAGCAAAGCTGTGGCTTGTGGGTATAGAAATGATGTATTTGTTGGGTGTTCTGCGTTGAATATGTATGCAAAGTGTGGGAAGATGGATGAAGCATTGGAACTGTTTGATAAAATGCCAAGCAAGGATATAGTCTGTTGGACGACTATGATGTCTGGAGATGAAGTTGTCATGCTGGGGTTGGTTCAAGCTATTGCAAATCTGGGTGACTCCAGATTGGGTCTCTCAGTTCATGGGTACTTAATTCGACGAGATGTGCCAATGGATGTTGTAATCCAAACCAGTCTTGATCAGCCCAAAATGATTTTGCAGGAAACGCAACTCGAATTGTTGATAGAGATGCAGAATCTAGGCTATGAACCTGACTTTGTTTACTCTGGAACTGCAGTTATTGATATGTACTCCAAATGTGGATCACTTTCATCTGCACGTGCCCTTTTAGATCAGATAAGATTTAAGGATATAGTTTCTTGGAATGCAATGATTTCCGCATGTGGAATCCATGGGAATGGGAAGGAAGCTCTATCCCTGTTCCAACAGATGATCAAAGAAACAGATAGAAAACCAGATCATGCAACTTTTTCTGCTCTTCTCTCAGCTTTAAGCCCCTCAAGTCTTGTGCAAGAAGGTCGATACTCTTTCGATATCATGATCAATAATTTCAAGATACCTGCAAATGAGAAGCATTATGCTTGCATGATTGATCTCCTGGCTAGCGCAGGCCAAGTCGACAAAGCTCTGAAACTGATAGGTTCCATGAAAACTGAACATGGGGTTGCCGTATGGGTTTCTCTACTTGGGGGTTGCTGCAGCTATGAGAAGTTTTTGATTGGAGAGAAGGCGGCAAAGAAGGTTCTTGAGTTGAATCCGGATGATCCTGGAATATACGCTTTAATCTCTAACTTCTTTGCCAAGGCACGCAAGTGGGATGAAGTAGCTGAAGTGAAGAAGATTATGAATATGTCAGAAGTGAAAAAGGCCCCTGGATATAGTGTGGTTGAGGTGAATGGAAAGCAACATGCTTTTCTCATGGAAGATAAGAGTCACCATCTTTATAAGAATATTGTTTGTGTTTTGAATCTTGAAATGAGAATGGCAGGCTATCTCACATTTGACGAAATTCTACTGTTTGATCTGAAAGATGACACAAATGAGAAAGTTTACACTCAGGAAGAAATGGCGGTAAGTTTTTCTTTCTCTTCTCTTGGCCAGATCGAGCATATTCAATTAGAATCTTGCGATCAACGATCTCAAATACCAAGATTTGGCAGTTGGGAAAATGAAGATAATGTTCCTTATACGGCTTACTTTGAGAAGGCACGAAAATATCGAACAGGCTCAATGATGAATCCAAATGTTCCTGACGGAAATCCAGATTTAGTTCATGACAATTCATCTTCTTCCAATCTCGCACCTACTGAACCTGTGGTTAATTCAGAGGATCAAAATGGAAAAGGATCGGTGAGATCAACACTTGAATTACAAAAGAGCAAGGATGATGCTGTTCCTAAGCCTTCTACTCGTTATGACAATGTGGTCAATAGAAGTGGCAATGATTCTGCACATCGTCAGGGAGTAGGTTCTGCTGACACTCGTCAACAACCTGCAAGACAAAGTGCTGGGTCTGAGTATAGTATTGAACGCTCGCCACTTCATCGCCTGGCAAAGACCCCGGGCAGAGATAGCCCCTCTTGGGAAGGAAAGAATTCCTATGACAGCAGCCATGGTACCCCTGAAAGATCCCGACTAAGAACACCTAATCGAGGGGATGAATCTCCTGACAAAGCTGCTGCTGTTCCCAAATTTGGTGATTGGGATGAAAATGACCCTGCGTCAGCTGATGGCTACACTCAACTTTTCGACAAAGTGAAGGAGGAGAGAGCTTGTGGTGGACAAGCGCCTGTCACACTCACCCAGAGACCATTTGTTGTCCGGAATCAACATACTAATGACAAAGCAAAGAGTTGCTGCTTTGGCTGGTGCAAATAG	2085	0.4259	MILEGVRPDSSIFTVALKACTRLLDLKMGKEIWSKAVACGYRNDVFVGCSALNMYAKCGKMDEALELFDKMPSKDIVCWTTMMSGDEVVMLGLVQAIANLGDSRLGLSVHGYLIRRDVPMDVVIQTSLDQPKMILQETQLELLIEMQNLGYEPDFVYSGTAVIDMYSKCGSLSSARALLDQIRFKDIVSWNAMISACGIHGNGKEALSLFQQMIKETDRKPDHATFSALLSALSPSSLVQEGRYSFDIMINNFKIPANEKHYACMIDLLASAGQVDKALKLIGSMKTEHGVAVWVSLLGGCCSYEKFLIGEKAAKKVLELNPDDPGIYALISNFFAKARKWDEVAEVKKIMNMSEVKKAPGYSVVEVNGKQHAFLMEDKSHHLYKNIVCVLNLEMRMAGYLTFDEILLFDLKDDTNEKVYTQEEMAVSFSFSSLGQIEHIQLESCDQRSQIPRFGSWENEDNVPYTAYFEKARKYRTGSMMNPNVPDGNPDLVHDNSSSSNLAPTEPVVNSEDQNGKGSVRSTLELQKSKDDAVPKPSTRYDNVVNRSGNDSAHRQGVGSADTRQQPARQSAGSEYSIERSPLHRLAKTPGRDSPSWEGKNSYDSSHGTPERSRLRTPNRGDESPDKAAAVPKFGDWDENDPASADGYTQLFDKVKEERACGGQAPVTLTQRPFVVRNQHTNDKAKSCCFGWCK	694

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele40g0934	694	Gene3D	Tetratricopeptide repeat domain	138	245	IPR011990	GO:0005515
	Lele40g0934	694	TIGRFAM	PPR: pentatricopeptide repeat domain	262	288	IPR002885	-
	Lele40g0934	694	TIGRFAM	PPR: pentatricopeptide repeat domain	188	222	IPR002885	-
	Lele40g0934	694	TIGRFAM	PPR: pentatricopeptide repeat domain	51	78	IPR002885	-
	Lele40g0934	694	MobiDBLite	consensus disorder prediction	491	523	-	-
	Lele40g0934	694	Pfam	Cleavage site for pathogenic type III effector avirulence factor Avr	625	659	IPR008700	-
	Lele40g0934	694	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	1	85	-	-
	Lele40g0934	694	MobiDBLite	consensus disorder prediction	479	641	-	-
	Lele40g0934	694	Pfam	E motif	309	366	IPR046848	-
	Lele40g0934	694	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	44	78	IPR002885	-
	Lele40g0934	694	FunFam	Pentatricopeptide repeat-containing protein, chloroplastic	157	384	-	-
	Lele40g0934	694	Pfam	PPR repeat	52	76	IPR002885	-
	Lele40g0934	694	Pfam	PPR repeat	262	287	IPR002885	-
	Lele40g0934	694	Pfam	PPR repeat	160	184	IPR002885	-
	Lele40g0934	694	MobiDBLite	consensus disorder prediction	541	577	-	-
	Lele40g0934	694	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	186	216	IPR002885	-
	Lele40g0934	694	MobiDBLite	consensus disorder prediction	605	634	-	-
	Lele40g0934	694	Pfam	PPR repeat family	185	233	IPR002885	-
	Lele40g0934	694	Gene3D	Tetratricopeptide repeat domain	1	137	IPR011990	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele40g0934	Lele-ChrLele40	19873648	19881311	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele40g0934	1	411	Glycoside Hydrolase	AT3G49170	29.613	4.88e-55	200

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele37g1114	37	20798393	20803751	Lele40g0934	40	19873648	19881311	hybridization
	Lele38g0994	38	21477695	21483780	Lele40g0934	40	19873648	19881311	hybridization