Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele38g0994 | ATGATCAATAATTTCAAGATACCTGCAAATGAGAAGCATTATGCTTGCATGATTGATCTCCTGGCTCGCGCAGGCCAAGTGGACAAAGCTCTGAAACTGATACGTTCCATGAAAACTGAACATGGGGTTGCTGTATGGGTTTCTCTACTTGGGGGTTGCTGCAACTATGAGAAGTTTTTGATTGGAGAGAAGGTGGCAAAGAAGGGTCCCTGGATTAGTGTGGTTGAGGTGAATGGAAAGCAACATGCTTTTCTCATGGAAGATAAGAGTCACCATCTTTATAAGAACATTGTTTGTGTTTTGGATAATTTGAATCTTGAAATGAGAATGGCAGGCTATCTCACATTTGACGAAATTCTACTGTTTGATCTGAAAGATGACACAAATGAGAAAGCTTACAGTAATATAGTTTACTTTCATGAGAGAGAAAGGAAGATGGAAGAGAATGGTCAGACATTACCGGTGGCCCCGCAACGATCTCAAGTACCGAGATTTGGCAGTTGGGAAAATGAAGATAATGTTCCTTATACGGCTTACTTTGAGAAGGCACGAAAAGATCGAACTGGCTCAAGGATGAATCCAAATGTTCCTGATGGAAATCCAGATTTAGTTCATGATAATTCATCTTCTTCCAATCTCCCACCTACTGAACCTGTGGTTAATTCAGAGGATCAAACTGGAAAAGGATCGGTGAGATCAACGCTTGAATTACAAAAGAGCAAGGATGATGCTGTTCCTAAGCCTTCTACTGATTCTCCAGCTCGTCATGACAATATGGGCAATAGAAGTGGCAATGATTCTGCACATCGTCAGGGAGTAGGTTCTGCTGACACTCGTCAAAAACCTGCAAGACAAAGTGCTGGGTCTGAGTATAGTATTGAACGCTCGCCACTTCATCGCCTGGCAAAGACCCCAGGCAGAGATAGCCCCTCTTGGGAAGGAAAGAATTCCTATGACAGCAGCCATGGTACCCCTGGAAGATCCCGACTAAGAACACCTAATCGAGGAGATGAATCTCCTGACAAAGCTGCTGCTGTTCCCAAATTTGGTGATTGGGATGAAAATGACCCTGCGTCAGCTGATGGCTACACTCAACTTTTCAACAAAGTGAAGGAGGAGAGAGCTTGTGGTGGACAAGCGCCTGGCACACCCACCCAGAGACCATTTGTTGTCCGGAACCAACATACTAATGACAAAGCAAAGAGTTGCTGCTTTGGCTGGTGCAAATAA | 1230 | 0.4398 | MINNFKIPANEKHYACMIDLLARAGQVDKALKLIRSMKTEHGVAVWVSLLGGCCNYEKFLIGEKVAKKGPWISVVEVNGKQHAFLMEDKSHHLYKNIVCVLDNLNLEMRMAGYLTFDEILLFDLKDDTNEKAYSNIVYFHERERKMEENGQTLPVAPQRSQVPRFGSWENEDNVPYTAYFEKARKDRTGSRMNPNVPDGNPDLVHDNSSSSNLPPTEPVVNSEDQTGKGSVRSTLELQKSKDDAVPKPSTDSPARHDNMGNRSGNDSAHRQGVGSADTRQKPARQSAGSEYSIERSPLHRLAKTPGRDSPSWEGKNSYDSSHGTPGRSRLRTPNRGDESPDKAAAVPKFGDWDENDPASADGYTQLFNKVKEERACGGQAPGTPTQRPFVVRNQHTNDKAKSCCFGWCK | 409 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele38g0994 | 409 | MobiDBLite | consensus disorder prediction | 153 | 167 | - | - | |
| Lele38g0994 | 409 | Gene3D | Tetratricopeptide repeat domain | 1 | 100 | IPR011990 | GO:0005515 | |
| Lele38g0994 | 409 | MobiDBLite | consensus disorder prediction | 235 | 250 | - | - | |
| Lele38g0994 | 409 | MobiDBLite | consensus disorder prediction | 202 | 234 | - | - | |
| Lele38g0994 | 409 | TIGRFAM | PPR: pentatricopeptide repeat domain | 14 | 40 | IPR002885 | - | |
| Lele38g0994 | 409 | Pfam | PPR repeat | 14 | 39 | IPR002885 | - | |
| Lele38g0994 | 409 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 10 | 44 | IPR002885 | - | |
| Lele38g0994 | 409 | MobiDBLite | consensus disorder prediction | 148 | 169 | - | - | |
| Lele38g0994 | 409 | MobiDBLite | consensus disorder prediction | 310 | 328 | - | - | |
| Lele38g0994 | 409 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 1 | 68 | - | - | |
| Lele38g0994 | 409 | MobiDBLite | consensus disorder prediction | 331 | 349 | - | - | |
| Lele38g0994 | 409 | MobiDBLite | consensus disorder prediction | 254 | 292 | - | - | |
| Lele38g0994 | 409 | Pfam | Cleavage site for pathogenic type III effector avirulence factor Avr | 340 | 374 | IPR008700 | - | |
| Lele38g0994 | 409 | MobiDBLite | consensus disorder prediction | 185 | 361 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele38g0994 | Lele-ChrLele38 | 21477695 | 21483780 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele38g0994 | 1 | 140 | Glycoside Hydrolase | AT3G49170 | 26.374 | 2.53e-09 | 57.4 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele38g0994 | 38 | 21477695 | 21483780 | Lele39g0299 | 39 | 2043955 | 2057199 | hybridization | |
| Lele38g0994 | 38 | 21477695 | 21483780 | Lele40g0934 | 40 | 19873648 | 19881311 | hybridization |