Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0506 ATGGTACCACTCTCCTCCATGGCCATCTCTCCACCTTCGAAATTCACCCTTCTATGCTCTTTACACGCTCCCCCTCTTCTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCCCTCTCTTTCACTTTTCTTCCCTCTGCTTTATCTGCTCCTCAGCGTTTCCGTAAATTTCCGCTCAATACGGCAATCCGATGTGCTGAAAGAGAAGTAGCCTCACCTAAGCCAGGTTTTGATCCCAATTCCGGTGTCGCTGTTTACAAACCCAAATCCTACGAAGTTCTCGTCGCTGATGCTGCGAATTCCCTCTCTTATTCTCTTGAAGACGGAAAATCTCGCCTTGAGATTGATTTCCCGCCTTTGCCCAGCAACATTTCTTCTTATAAGGGATCTTCAGATGAATTCAATGATGCCAATATTCAACTTGCCTTGGCTGTTGTGAGAAAGCTCCAGGAAAAGAAGGAGACTAGAGCTTGCATAGTATTCCCTGATAAGCCAGAAAAACGAAGGGCCTCTGAGTTGTTCAAAGCAGCTCTGGATTCAATTGATGGAATCACCATAGGTTCTCTGGATGACGTCCCTGGTGGACCTGTAACTTCATTTTTCAGATCTATTAGAGACACCCTTGATTTTGACTTTGAAGATGAGAATGAAGGTCGTTGGAAGTCTAGTGAGCCCCCTACACTATACATATTCATTAATTGCAGTACACGAGATCTTGCTTACATAGAGCAGTATGTGGAAAAATTTGCTATGACAACGCCAACACTTCTATTTAATCTTGAATTAGAAACCCTGCGTGCTGACTTAGGCCTTCTGGGCTTTCCACCTAAAGATTTGCAATACCGATTTCTTTGTCAATTTACTCCAGTGTTCTATATTCGAATCAGAGACTATTCAAAGACAGTTGCTGTAGCTCCTTATATCGTCAATTACAGTGGAGCACTGTTTCGCCAGTATCCTGGTCCTTGGCAGGTGATGCTTAAGCAAGCAGATGGTTCATATGCTTGCGTAGCTGAGAGTGCAACCCGCTTCACCCTTGGTGAAGCCAAAGAGGAATTGTTGAGGGTCCTGGGACTTCAAGAAGAAGAGGGTAGCTCTCTAGAATTTCTCCGAAAAGGCTACAAGTCAAGCACATGGTGGGAAGAAGATGTTGGGTTAGAAGTATCTTCTGCATGGCGGAATTGA 1191 0.4416 MVPLSSMAISPPSKFTLLCSLHAPPLLLSSSSSSSSSSSSLSFTFLPSALSAPQRFRKFPLNTAIRCAEREVASPKPGFDPNSGVAVYKPKSYEVLVADAANSLSYSLEDGKSRLEIDFPPLPSNISSYKGSSDEFNDANIQLALAVVRKLQEKKETRACIVFPDKPEKRRASELFKAALDSIDGITIGSLDDVPGGPVTSFFRSIRDTLDFDFEDENEGRWKSSEPPTLYIFINCSTRDLAYIEQYVEKFAMTTPTLLFNLELETLRADLGLLGFPPKDLQYRFLCQFTPVFYIRIRDYSKTVAVAPYIVNYSGALFRQYPGPWQVMLKQADGSYACVAESATRFTLGEAKEELLRVLGLQEEEGSSLEFLRKGYKSSTWWEEDVGLEVSSAWRN 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0506 396 Pfam Domain of unknown function (DUF1995) 90 352 IPR018962 -
Lele40g0506 396 PANTHER PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC 24 383 IPR044687 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0506 Lele-ChrLele40 4289329 4294078 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0561 37 4663527 4677481 Lele40g0506 40 4289329 4294078 hybridization
Lele38g0535 38 4476322 4481085 Lele40g0506 40 4289329 4294078 hybridization