Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0464 ATGGGGGGAGCTTGTTCTAGGAAGCAAGATCGGGACAGTGAAGATAGTTCTCATAGAAGACTTTCACAAAGATATTGCAAAAGTGGGAGTTTGAAATGGGTGAATTCATCATTTTCTTATCCTTCTATAGATTATCATACACAGAAAGGAGAATGCCCATCATTGTTGGACTTATGTGTCCAGAAAATATGTCAGGAGATTCACAATTATAGCACGTTTTCTTCAATCCCACGGGACATAAGTCAGCAAATTCTTAATGAATTGGTTTGTTCTCAATGTCTAACTGGTGCTTCCTTCAAAACTTTTGAAGATTGTTCTCTCCAGGATTTCTACTTGGGAGAATATCCTGGTGTGAATGACAGTTGGATGCAAATTATCTCATCGCAAGGGTCATCTTTACTATCTGTGGATCTTTCTGGGTCTGATGTCACTGATTATGGGCTAACTTATCTCAAAGATTGCAAAAATCTTTTAACCTTGAATCTTAATCACTGTGACCAGATTTCTGACCATGGTCTGGAGCATATCAATGGTCTGTCAAACTTAAAAAGTTTGAGTTTTCGAAGAAACAATGCCATTTCTGCACAAGGAGTAAGTTCATTTTCTGCTCTTGTTAACTTGGTTAAGTTGGATTTGGAGAGATGTCCTGGAATACATGGAGGCCTTGTTAATCTTCAAGGTTTAACCAAGCTGGAATCTCTAAATATGAAGTGGTGTAATTGCATAACAGATGCTGACATGAAGCCTTTATCAGAGCTTACAAACTTGAAGAGTCTAGAGATTTCATGCAGTAAAGTGACAGATTTTGGCGTCACATTCTTGAAAGGATTACAAAGGCTTGCTCTGTTAAATTTGGAAGGATGCCTTGTTACAGCTGCATGCTTGGAATCTCTAGCAGAGCTTCCTGCCCTGTCAAATTTGAATCTCAATAGATGTAATCTTTCGGATGATGGATGTGAAAAGTTTTCACGACTGCAAAATTTGAAAGTGCTAAACTTGGGATTCAATGAGATAACAGACGCATGTTTAGCATACTTAAAAGGATTGACAAAATTAGAGAGCTTGAATCTAGATTCATGTAGGATTGGTGATGAAGGATTGATAAATCTGGCAGGCCTTCAGCAGTTGAAATGCTTGGAATTGTCTGATACGGAAGTTGGTAGCAGTGGGCTCCACCATATATCAGGCTTGTCTCGTCTGGAGAAGATAAACTTGTCATTCACCATGATTAGTGACGGTGGTTTAAGGAAACTGTCTGGACTTTCATCTCTGAAGTCACTTAATTTGGATGCTCGACAAATTACTGATTCTGGACTAGCAGCCCTTACAAGTTTGACTGGCCTTACTGACCTGGATTTGTTTTGTGCACGAATCACCGATTCTGGAACGAACTATTTGAAAAACTTTAAGAACCTGAGGTCGCTGGAGATATGTGGTGGAGGATTGACTGATGATGGTGTTAAAAATATCGCACAGCTTGCATCTCTGATTTGTCTAAATTTATCACAGAACTGCAGTCTTACGGACAAATCCCTGCAGTTTATTTCTGGGCTCGCGAAGCTGATCTCTTTGAACGTTTCCAATTCTAATGTCACAAGTGCTGGTCTGCAACATCTTAAAACGCTCAAAAACTTGAGATCTCTGACATTGGAGTCCTGCAAGGTGACAGCAAATGACATTAGGGAACTTAAAGCGGACCTCCCTAATCTGGTTAACTTTCGGCCAGAATAG 1731 0.3975 MGGACSRKQDRDSEDSSHRRLSQRYCKSGSLKWVNSSFSYPSIDYHTQKGECPSLLDLCVQKICQEIHNYSTFSSIPRDISQQILNELVCSQCLTGASFKTFEDCSLQDFYLGEYPGVNDSWMQIISSQGSSLLSVDLSGSDVTDYGLTYLKDCKNLLTLNLNHCDQISDHGLEHINGLSNLKSLSFRRNNAISAQGVSSFSALVNLVKLDLERCPGIHGGLVNLQGLTKLESLNMKWCNCITDADMKPLSELTNLKSLEISCSKVTDFGVTFLKGLQRLALLNLEGCLVTAACLESLAELPALSNLNLNRCNLSDDGCEKFSRLQNLKVLNLGFNEITDACLAYLKGLTKLESLNLDSCRIGDEGLINLAGLQQLKCLELSDTEVGSSGLHHISGLSRLEKINLSFTMISDGGLRKLSGLSSLKSLNLDARQITDSGLAALTSLTGLTDLDLFCARITDSGTNYLKNFKNLRSLEICGGGLTDDGVKNIAQLASLICLNLSQNCSLTDKSLQFISGLAKLISLNVSNSNVTSAGLQHLKTLKNLRSLTLESCKVTANDIRELKADLPNLVNFRPE 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0464 576 Pfam Leucine rich repeat 302 362 IPR001611 GO:0005515
Lele40g0464 576 PANTHER UNCHARACTERIZED 326 476 - -
Lele40g0464 576 FunFam Leucine-rich repeat family protein 220 298 - -
Lele40g0464 576 Gene3D Ribonuclease Inhibitor 302 371 IPR032675 -
Lele40g0464 576 FunFam Predicted protein 118 219 - -
Lele40g0464 576 FunFam F-box/LRR-repeat protein 14 299 382 - -
Lele40g0464 576 SMART LRR_RI_2 228 258 - -
Lele40g0464 576 SMART LRR_RI_2 542 569 - -
Lele40g0464 576 SMART LRR_RI_2 349 375 - -
Lele40g0464 576 SMART LRR_RI_2 301 330 - -
Lele40g0464 576 SMART LRR_RI_2 397 423 - -
Lele40g0464 576 Gene3D Ribonuclease Inhibitor 480 572 IPR032675 -
Lele40g0464 576 Gene3D Ribonuclease Inhibitor 378 479 IPR032675 -
Lele40g0464 576 Gene3D Ribonuclease Inhibitor 60 219 IPR032675 -
Lele40g0464 576 Gene3D Ribonuclease Inhibitor 220 301 IPR032675 -
Lele40g0464 576 SUPERFAMILY RNI-like 135 505 - -
Lele40g0464 576 SMART LRR_CC_2 349 373 IPR006553 -
Lele40g0464 576 SMART LRR_CC_2 421 445 IPR006553 -
Lele40g0464 576 SMART LRR_CC_2 154 179 IPR006553 -
Lele40g0464 576 SMART LRR_CC_2 542 567 IPR006553 -
Lele40g0464 576 SMART LRR_CC_2 228 253 IPR006553 -
Lele40g0464 576 SMART LRR_CC_2 301 325 IPR006553 -
Lele40g0464 576 SMART LRR_CC_2 469 493 IPR006553 -
Lele40g0464 576 SMART LRR_CC_2 180 204 IPR006553 -
Lele40g0464 576 Pfam Leucine Rich repeat 154 176 IPR001611 GO:0005515
Lele40g0464 576 Pfam Leucine Rich repeat 229 251 IPR001611 GO:0005515
Lele40g0464 576 Pfam Leucine Rich repeat 180 202 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0464 Lele-ChrLele40 3825881 3834813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0464 277 504 Receptor kinase-like Gene Family AT1G75820 27.826 3.93e-11 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0464 40 3825881 3834813 Lele40g0464 40 3825881 3834813 ECH
Lele37g0520 37 4263480 4270586 Lele40g0464 40 3825881 3834813 hybridization
Lele38g0492 38 3969336 3981765 Lele40g0464 40 3825881 3834813 hybridization