Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0492 ATGGGGGGAGCTTGTTCTAGGAAGCAAGATCGGGACAGTGAAGATAGTTCTCATAGAAGACTTTCACGAAGATATTGCAAAAGTGGGAGTTTGAAATGGTTGAATTCATCATTTTCTTATCCTTCTATGGATTATCATACACAGAAAGGAGAATGTCCATCATTGTTGGGCTTATGTGTCCGGAAAATATGCCAGGAGATTCATAATTATAGCACGTTTTCTTCAATCCCACGGGACATAAGTCAGCAAATTCTTAATGAATTGGTTTGTTCCCAATGTCTAACCGGTGATTCCTTCAAAGCTTTTCAAGATTGTTCTCTCCAGGATTTCTACTTGGGAGAATATCCTGGTGTGAATGACAGTTGGATGCAAATTATCTCATCGCAAGGGTCATCTTTACTATCTGTGGATCTTTCTGGGTCTGATGTCACTGATTATGGGCTGACTTATCTCAAAGATTGCGCAAATCTTTTAACCTTGAATCTTAATCACTGTGACCAGATTTCTGACCATGGTCTGGAGCATATCAATGGTCTGTCTAGCTTGAAAAGTTTGAGTTTTAGAAGAAACAATGCCATTTCTGCACAAGGAGTAAGTTCATTTTCTGCTCTTGTTAACTTGGTTAAGTTGGATTTGGAGAGATGTCCTGGAATTCATGGGGGCCTTGTTCATCTTCAAGGTTTAACCAAGCTGGAATCTCTAAATATGAAGTGGTGTAACTGCATAACAGATGCTGACATGAAGCCTTTATCAGAGCTTACAAACTTGAAGAGTCTAGAGATTTCATGCAGTAAAGTGACAGATTTTGGCGTCACTTTCTTGAAAGGATTACAAAGGCTTGCTTTGTTAAATCTGGAAGGATGCCTTGTTACAGCTGCATGCTTGGATTCTCTAGCAGAGCTTCCTGCCCTATCAGACTTGAATCTCAATAGATGTAATCTTTCGGATGATGGATGTGAAAAGTTTTCACGACTGCAAAATTTGAAAGTGCTAAACTTGGGATTCAATGAGATAACAGACGCATGTTTAGCATACTTAAAAGGATTGACAAAATTAGAGAGCTTGAATCTAGATTCATGTAGGATTGGTGATGAAGGATTGATAAATCTGGCAGGCCTTCAGCAGTTGAAATGCTTGGAATTGTCTGATACGGAGGTTGGTACAAGTGGGCTCCACCATATATCAGGCTTGTCTCGTCTGGAGAAGATAAACTTGTCATTCACCATGATTAGTGATGGTGGTTTAAGGAAATTGTCTGGACTTTCATCTCTGAAGTCACTTAATTTGGATGCTCGCCAAATTACTGATTCTGGACTAGCAGCCCTCACAAGTTTGACTGGGCTTACTGACCTGGATTTGTTTTGTGCACGAATCACCGATTCTGGAACAAACTATTTGAAAAACTTTAAGAACCTGAGGTCGCTGGAAATATGTGGTGGAGGATTGACTGATGATGGCGTTAAAAATATCGCACAGCTTTCATCTCTGATGTGTCTAAATTTATCACAGAACTGCAGTCTTACGGACAAATCCCTGCAGTTTATTTCTGGGCTCGCGAAGCTGATCTCTTTGAACGTTTCCAATTCTAATGTCACCAGTGCCGGTCTGCAACATCTTAAAACGCTCAAAAACTTAAGATCTCTGACATTGGAGTCCTGCAAGGTGACCGCAAATGACATTAGGAAACTTAAAGCGGACGTCCCTAATCTGGTTAACTTTCGGCCAGAATAG 1731 0.4044 MGGACSRKQDRDSEDSSHRRLSRRYCKSGSLKWLNSSFSYPSMDYHTQKGECPSLLGLCVRKICQEIHNYSTFSSIPRDISQQILNELVCSQCLTGDSFKAFQDCSLQDFYLGEYPGVNDSWMQIISSQGSSLLSVDLSGSDVTDYGLTYLKDCANLLTLNLNHCDQISDHGLEHINGLSSLKSLSFRRNNAISAQGVSSFSALVNLVKLDLERCPGIHGGLVHLQGLTKLESLNMKWCNCITDADMKPLSELTNLKSLEISCSKVTDFGVTFLKGLQRLALLNLEGCLVTAACLDSLAELPALSDLNLNRCNLSDDGCEKFSRLQNLKVLNLGFNEITDACLAYLKGLTKLESLNLDSCRIGDEGLINLAGLQQLKCLELSDTEVGTSGLHHISGLSRLEKINLSFTMISDGGLRKLSGLSSLKSLNLDARQITDSGLAALTSLTGLTDLDLFCARITDSGTNYLKNFKNLRSLEICGGGLTDDGVKNIAQLSSLMCLNLSQNCSLTDKSLQFISGLAKLISLNVSNSNVTSAGLQHLKTLKNLRSLTLESCKVTANDIRKLKADVPNLVNFRPE 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0492 576 PANTHER UNCHARACTERIZED 325 476 - -
Lele38g0492 576 Pfam Leucine Rich repeat 154 176 IPR001611 GO:0005515
Lele38g0492 576 Pfam Leucine Rich repeat 180 202 IPR001611 GO:0005515
Lele38g0492 576 Pfam Leucine Rich repeat 229 251 IPR001611 GO:0005515
Lele38g0492 576 FunFam Predicted protein 118 219 - -
Lele38g0492 576 FunFam Leucine-rich repeat family protein 220 298 - -
Lele38g0492 576 Pfam Leucine rich repeat 471 529 IPR001611 GO:0005515
Lele38g0492 576 Pfam Leucine rich repeat 302 362 IPR001611 GO:0005515
Lele38g0492 576 FunFam F-box/LRR-repeat protein 14 299 382 - -
Lele38g0492 576 Gene3D Ribonuclease Inhibitor 300 402 IPR032675 -
Lele38g0492 576 SMART LRR_CC_2 154 179 IPR006553 -
Lele38g0492 576 SMART LRR_CC_2 349 373 IPR006553 -
Lele38g0492 576 SMART LRR_CC_2 421 445 IPR006553 -
Lele38g0492 576 SMART LRR_CC_2 301 325 IPR006553 -
Lele38g0492 576 SMART LRR_CC_2 228 253 IPR006553 -
Lele38g0492 576 SMART LRR_CC_2 469 493 IPR006553 -
Lele38g0492 576 SMART LRR_CC_2 518 542 IPR006553 -
Lele38g0492 576 Gene3D Ribonuclease Inhibitor 480 572 IPR032675 -
Lele38g0492 576 Gene3D Ribonuclease Inhibitor 403 479 IPR032675 -
Lele38g0492 576 Gene3D Ribonuclease Inhibitor 220 299 IPR032675 -
Lele38g0492 576 Gene3D Ribonuclease Inhibitor 68 219 IPR032675 -
Lele38g0492 576 SUPERFAMILY RNI-like 273 565 - -
Lele38g0492 576 SUPERFAMILY L domain-like 130 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0492 Lele-ChrLele38 3969336 3981765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g0492 277 504 Receptor kinase-like Gene Family AT1G75820 26.957 2.27e-10 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0492 38 3969336 3981765 Lele38g0492 38 3969336 3981765 ECH
Lele38g0492 38 3969336 3981765 Lele40g0464 40 3825881 3834813 hybridization