Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0459 ATGGCGCCGAGGTCTGGCAGAGGGAAATCGAATAAAGCCAAGGCAGAGAAGAAGAAGGAAGAGAAAGCATCAGTACCTTCTCTGGTCGACATTAATGTCGTCACTCCTTATGATTCTTTAGTTGTCCTCAAGGGCATCTCTACGGATAAAATACTTGATGTAAGAAGGCTATTAGCTGTGAATGTGGAAACCTGCCATTTCACAAACTATTCTCTTTCTCACGAGGTTAAAGGGCACAGATTGAATGACAGAGTAGAGGTTGTTACTCTAAAGCCATCTGAATCTCCCACTGTTGCTGTTCTGGCCTTCTGGGATTACATAGAGGAAGCCCTAGCAATTGCCCATGTGAGGCGACTGTTGGACATCGTGGCCTGCACAACCAGGTTTGGGAAGCCTAGACGGGCCTTGAGAAGACCAGACTCCAAAGCTAAGAAACCTAGCAAGGCCCAAAATAATCAGAAACGGAATTCGAGCCCACCAACTACGCCCAATGAGGAACTCCGGATCGGGTCGCCGGCGCCAGTCTCGCCGATTTCTGATAATTTTGGCATGGTAGCCATTCATCCCACGCTGAAGCTTTCAGATTTCTACGAGTTCTTCTCTTTCTCTCATCTGTCTTCTCCGATTCTACACTTGAAGAGATGTGAACTGAAGAATGGGGAGGATAGACGCAAAGAAGATTACTTTCAGCTTCAGATTAAAATAGGCAACGGGAAGCTAATAGAAGTTGTCGCCTCAGAGAAAGGCTTTTATACCGTGGGGAAGCAGTCTCTTCAGAGCCATTCTTTAGTGGATCTTCTGAAACAGCTCAGCCGAGGTTTTGCCAATGCATATGGATCTTTGATGAAAGCATTTGTGGAACATAATAAGCTTGGTAATCTTCCATATGGATTCCGAGCAAATACATGGCTTGTTCCTCCATTTGTGACGGAGAATACTTCGAACTTTCCTGCCTTACCTACCGAGGACGAAAGCTGGGGTGGTAATGGCGGTGGCCAGGGAAGAAATGGTAAATACAATCTTAGACCATGGGCTACAGACTTTGCAATATTGGCTTCTCTTCCTTGCAAAACTGAAGAGGAGAGGGTGGTCAGAGATAGAAAAGCTTTTCTGCTTCACAGTCAATTTGTTGATACCTCAATATTTACAGCTGTTTCAGCTATAAGGCATGTCATAGAGTCAAATTTCAATGGAAATAACAAACTGCACTGTTCTCCGGATTCAATCCTGCAAGAAGATCGTGTGGGGGACTTGTCTATAGTAGTCAAACGTGATATCGGAGACACAAACCATAAGGATGATAAGAAACTTTCTAGTGGTGAGTCCACAGTGTTTAAGGAGGATTCTCAGAAGAATTTACTCAAAGGATTGACTGCAGATGAAAGTGTAATCGTTCGTGATACTTCTTCCTTGGCTGTCGTTGTTGTACGCTACTGTGGATACGTTGCAACAGTAAGTGTGGTGGGTAATATTAACAGAAGGAAGCCTGAATTTCAAGATATTGAAACCGATGATCAGCCAGACGGAGGGGCAAATGCTCTCAATGTCAATAGCTTGAGGCTACTGCTTCACAAGTTTGGAGGTGAGCCATCCAAAGGGAGATCATCAGTAACAAATTTGGATGATTTAGACTCTTCTAGAAATCTTGTTCGGAAGGTGGTTAAAGAAAGCTTGGGAAAGAAAAGTGGGGAGCTAGTTGATTCAGAAAGGTCTATTCGGTGGGAACTTGGTTCTTGTTGGGTACAACATTTGCAAAAGCGGGAAACTTCAACAGATAAAAGTTCTGAAAAAAGGGAAGATGGCAAGGAAGCTGTACAAGCTGTCAAAGGTCTTGGAAAGAGATTCAAATTTTTGAAGAGAAGAGGAAAAAAACCAACCAGTTCAGATTGTACAGACCATAGAGAGCAAAATGACTCTAGACCTTGTGATGTGGAAACCGATAGAGCTGAATTAAACAATTATGACTTAAATTGCTCTGCTGAATTGGAGAAGCTTCTTTCAGAAGAAGCATTTTTGCGACTGAAAGAATCTGGAACTGATCTGCATCTAAAGGTTAAACTTGCAGAAAATCTTCCACACATACAATCTCTTTGTACTCATGAGATGGTTACTCGAGCTTTCAAGCATTTACTCAAAGCCGTAATTGCCTCAGTTGATAATGTAGAAGACTTATCTCCCGCTATTGCATCAACATTGAATTTCTTACTTGGAAGCTGTCCAATGGAAAATACTGACCAAAATTTGACTGAAGACAATCATCTCAGATTGCAGTGGCTACGGGCTTTGGCAAAGATGATGGCTGTTTGTGGTCCCTATCATCGAACTACTGCAAGTGCTTATAGTCTTCTAGCTGTGGTTCTCTACCACACTGGAGATTTTAATCAAGCAACCATATATCAACAAAAAGCACTGGATATAAATGAGAGGGAGCTTGGGCTTGACCATCCAGACACAATGAAAAGCTATGGGGATCTCTCTGTCTTCTATTATCGTCTGCAACACATGGAGCTGGCTCTGAAGTATGTCAACCGTGCTCTCTTCCTTCTTCACTTCACATGTGGACTATCTCATCCAAACACAGCAGCAACATATATAAACGTGGCTATGATGGAAGAGGGTATGGGAAATGTTCATGTGGCGCTCAGATATTTGCATGAAGCTCTTAAATGCAATAAAAGATTGTTAGGAGAAGATCATATCCAGACTGCTGCGAGCTTCCATGCCATTGCCATAGCTCTTTCCTTGATGGAAGCATATTCCCTGAGTGTACAACATGAACAAACGACCCTTAAGATACTTCAAGAAAAGCTTGGATCTGAAGATCTTCGTACACAGGATGCTGCTGCATGGCTCGACTATTTTGAATCAAAAGCAATAGAACAACAAGAAGCGGCTAAAAATGGAACTCCAAAGCCTGATGCATCCATTGCAAGTAAAGGTCACCTTAGTGTATCGGATCTCCTGGATTTTATTAATCCTGAACAAGATCCAAAAGGAAATGACACTCAGAGGCAACAGCGCCGTGCAAAGCAGATACACCCAATAATTGATAAACACCATCAAGAACGTGATGATTCAATAGCTGAAGAGAACATTCCCTTAGATGGATCAAAAGATGATAAAAGTATGGAAAAAGGCAACACTCAAAAAACAAAATTCATGCTTCATTCTGAAGAACTGAAAGAAAATGGAGAATTCACTAGATATGTGCCTGAGACAAGTGAAGTTGTTGAGGAAATATCCTCTAATGAAGGGTGGCAAGAAGCCAATTCTAAAGGGCGGTCCGGAAGGAGACCTCATCTTGCAAAGCTGAGGATTAATAGCTCCGAGAATCACATCGTCAGAGGAAGCAGGGCACATAAAGGAACTCCAAAAGCCACGTCAACCACACTATCTTCACCTGGACAATTAAAAGCCAGAAGCTCCACTTTAAAAGAGGAACATGTTAATCATTCAACAAGAGCTCCAGTGTCCAAAACTTCCTCTACTCCAGCAGCTCTAAGACCTTTGGCTTCAAAGTCTATATCTTACAAAGAAGTGGCTCTGGCACCACCAGGTACTGTTTTAAAGCCACTGTTGGAGAAAGCTGAAGGGGACGACGTAAAGACTGAAAGCGACAAGTGCAATGCAGCTGAAGAAAGCTGCCAAAGCTCTGTAGTTGAAGCAGTTTCTGCACAAGAAGATAAAACGGAGGGGACTCATGAACCTGACATTCAAAGAGAAAATTCTGCTTCAGAACTTGAAGAGGGATCCCTCTCTTCTGATCAGGCAAAACCTGCAGAAACCAATGGTAGTAAGCTTTCAGCTGCAGCGGAACCATTCAACCCGGGAATGTTGTTTATGCCTCACCATTTAAATTCGGTTCCCATCTCAAACATTTATGATACAAATGCAAGTCAAGGCATGCTTGCGGATCCTGCTCTTCCTCCTGTTGCTGCTAGAGTCCCCTGTGGACCGAGATCACCTCTTTACTATAGAACCAACTATACTTTTAGCATGAAACATGGTTCTTCAAAAAATCACACTCCCATCAGAGAAAGAACTGGACTTGGGGCTCCAAGAATCATGAATCCGCATGCAACTGAGTTTGTTCCCAGAAAAGCTTTGCAAACGGAGACCAACGATGCCGATTCCTTTGGAACAAATATGGCAGAAAACAATATAGATGAAAAAATCAGCAAGAATTCGAAGAAAAGTTCCTTGAGAAAGCGTGTTTCTGGATCTGATAAGTCAGAGCTAGCTAGGCAGATATTGCTTAGCTTGCTTGTGAAATCAGTTCTGCAAAATATTGATTCTGCTGATGAATCCAAAGTCAGTGAAGAAAGAAGCGAGAAAATGGGAAATTCTTCTGATGCAATACCCAAAGACAATGCTATTATAAGAATTCTATACACGAATGAAGACAAAAATACGATGAATCCCCAATCAAATGGAAGCGAAGAGCAAGAAAACATAGGTGCAGCCAATAAAAACAACGGAGATGAAGGGTTTATAGTTGTGACTAAGAAAAGGAGCAGGCAGAAGTTCACAGATGGAGTATCAGTTTTGGGCAATCAGCAATCCATCTGTGCTTCAGTCCGTTGA 4584 0.4243 MAPRSGRGKSNKAKAEKKKEEKASVPSLVDINVVTPYDSLVVLKGISTDKILDVRRLLAVNVETCHFTNYSLSHEVKGHRLNDRVEVVTLKPSESPTVAVLAFWDYIEEALAIAHVRRLLDIVACTTRFGKPRRALRRPDSKAKKPSKAQNNQKRNSSPPTTPNEELRIGSPAPVSPISDNFGMVAIHPTLKLSDFYEFFSFSHLSSPILHLKRCELKNGEDRRKEDYFQLQIKIGNGKLIEVVASEKGFYTVGKQSLQSHSLVDLLKQLSRGFANAYGSLMKAFVEHNKLGNLPYGFRANTWLVPPFVTENTSNFPALPTEDESWGGNGGGQGRNGKYNLRPWATDFAILASLPCKTEEERVVRDRKAFLLHSQFVDTSIFTAVSAIRHVIESNFNGNNKLHCSPDSILQEDRVGDLSIVVKRDIGDTNHKDDKKLSSGESTVFKEDSQKNLLKGLTADESVIVRDTSSLAVVVVRYCGYVATVSVVGNINRRKPEFQDIETDDQPDGGANALNVNSLRLLLHKFGGEPSKGRSSVTNLDDLDSSRNLVRKVVKESLGKKSGELVDSERSIRWELGSCWVQHLQKRETSTDKSSEKREDGKEAVQAVKGLGKRFKFLKRRGKKPTSSDCTDHREQNDSRPCDVETDRAELNNYDLNCSAELEKLLSEEAFLRLKESGTDLHLKVKLAENLPHIQSLCTHEMVTRAFKHLLKAVIASVDNVEDLSPAIASTLNFLLGSCPMENTDQNLTEDNHLRLQWLRALAKMMAVCGPYHRTTASAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLSVFYYRLQHMELALKYVNRALFLLHFTCGLSHPNTAATYINVAMMEEGMGNVHVALRYLHEALKCNKRLLGEDHIQTAASFHAIAIALSLMEAYSLSVQHEQTTLKILQEKLGSEDLRTQDAAAWLDYFESKAIEQQEAAKNGTPKPDASIASKGHLSVSDLLDFINPEQDPKGNDTQRQQRRAKQIHPIIDKHHQERDDSIAEENIPLDGSKDDKSMEKGNTQKTKFMLHSEELKENGEFTRYVPETSEVVEEISSNEGWQEANSKGRSGRRPHLAKLRINSSENHIVRGSRAHKGTPKATSTTLSSPGQLKARSSTLKEEHVNHSTRAPVSKTSSTPAALRPLASKSISYKEVALAPPGTVLKPLLEKAEGDDVKTESDKCNAAEESCQSSVVEAVSAQEDKTEGTHEPDIQRENSASELEEGSLSSDQAKPAETNGSKLSAAAEPFNPGMLFMPHHLNSVPISNIYDTNASQGMLADPALPPVAARVPCGPRSPLYYRTNYTFSMKHGSSKNHTPIRERTGLGAPRIMNPHATEFVPRKALQTETNDADSFGTNMAENNIDEKISKNSKKSSLRKRVSGSDKSELARQILLSLLVKSVLQNIDSADESKVSEERSEKMGNSSDAIPKDNAIIRILYTNEDKNTMNPQSNGSEEQENIGAANKNNGDEGFIVVTKKRSRQKFTDGVSVLGNQQSICASVR 1527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0459 1527 SUPERFAMILY TPR-like 772 892 IPR011990 GO:0005515
Lele40g0459 1527 Gene3D Tetratricopeptide repeat domain 742 982 IPR011990 GO:0005515
Lele40g0459 1527 MobiDBLite consensus disorder prediction 1080 1166 - -
Lele40g0459 1527 MobiDBLite consensus disorder prediction 1227 1244 - -
Lele40g0459 1527 MobiDBLite consensus disorder prediction 1210 1224 - -
Lele40g0459 1527 MobiDBLite consensus disorder prediction 1122 1140 - -
Lele40g0459 1527 MobiDBLite consensus disorder prediction 1245 1263 - -
Lele40g0459 1527 Pfam Mitochondrial function, CLU-N-term 48 123 IPR028275 -
Lele40g0459 1527 MobiDBLite consensus disorder prediction 150 165 - -
Lele40g0459 1527 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 685 752 IPR027523 GO:0006996
Lele40g0459 1527 MobiDBLite consensus disorder prediction 1390 1409 - -
Lele40g0459 1527 MobiDBLite consensus disorder prediction 990 1045 - -
Lele40g0459 1527 MobiDBLite consensus disorder prediction 1197 1270 - -
Lele40g0459 1527 MobiDBLite consensus disorder prediction 1432 1452 - -
Lele40g0459 1527 Pfam Tetratricopeptide repeat 776 846 - -
Lele40g0459 1527 Pfam Tetratricopeptide repeat 860 934 - -
Lele40g0459 1527 MobiDBLite consensus disorder prediction 1469 1489 - -
Lele40g0459 1527 MobiDBLite consensus disorder prediction 622 642 - -
Lele40g0459 1527 ProSiteProfiles TPR repeat profile. 777 810 IPR019734 GO:0005515
Lele40g0459 1527 MobiDBLite consensus disorder prediction 1000 1045 - -
Lele40g0459 1527 MobiDBLite consensus disorder prediction 1434 1449 - -
Lele40g0459 1527 MobiDBLite consensus disorder prediction 1376 1409 - -
Lele40g0459 1527 FunFam protein TSS isoform X2 850 981 - -
Lele40g0459 1527 MobiDBLite consensus disorder prediction 1469 1493 - -
Lele40g0459 1527 MobiDBLite consensus disorder prediction 133 172 - -
Lele40g0459 1527 MobiDBLite consensus disorder prediction 1 21 - -
Lele40g0459 1527 MobiDBLite consensus disorder prediction 619 642 - -
Lele40g0459 1527 ProSiteProfiles Clueless (Clu) domain profile. 322 595 IPR025697 -
Lele40g0459 1527 Pfam Translation initiation factor eIF3 subunit 135 684 750 IPR033646 -
Lele40g0459 1527 SMART tpr_5 777 810 IPR019734 GO:0005515
Lele40g0459 1527 SMART tpr_5 819 852 IPR019734 GO:0005515
Lele40g0459 1527 SMART tpr_5 861 894 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0459 Lele-ChrLele40 3763415 3775493 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0459 40 3763415 3775493 Lele40g0459 40 3763415 3775493 ECH
Lele37g0516 37 4206211 4218084 Lele40g0459 40 3763415 3775493 hybridization
Lele38g0487 38 3902951 3914742 Lele40g0459 40 3763415 3775493 hybridization