Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0516 ATGGCGCCGAGGTCTGGCAGAGGGAAATCGAATAAAGCCAAGGCAGAGAAGAAGAAGAAGGAAGAGAAAGCATCAGTACCTTCTCTGGTCGACATTAATGTCGTCACTCCTTATGATTCTCCAGTTGTCCTCAAGGGCATCTCTACTGATAAGATACTTGATGTAAGAAGGCTATTAGCTGTAAATGTGGAAACCTGCCATTTTACAAACTATTCTCTCTCTCACGAGGTTAAAGGGCAGAGATTGAATGACAGAGTAGAGGTTGTTACTCTAAAGCCATGTATTCTAAAAATGGTTGAAGAGGATTACGTAGAGGAAGCCCAAGCTATTGCACATGTGAGGCGACTGTTGGACATCGTGGCCTGCACAACCAGGTTTGTGAAGCCTAGACGAGCCTTGTCAAGCCCAGACTTCAAAGCTAAGAAAACTAGCAAGGCCCAAAATAATCATAAAGGAAATCCGAGCCCACCAACTACGCCCCATGAGGAATTGCGGATCGGGTCGCCGGCGCCCGTCCCGTCGGTTTCCGATAATTTAGGCATGGTAGCCATTCATCCCACGCCGAAGCTTTCAGATTTCTACGAGTTCTTCTCTTTCTCTCATCTATCTCCTCCGATTTTACACTTGAAGAGATGTGAACTGAAGAATGGGGATGATAGACGCAAAGAAGACTACTTTCAGCTTCAGGTTAAAATCGGCAACGGGAAGCTGATAGAAGTGGTCGCATCAGAAAAAGGCTTTTATACCGTGGGGAGGCAGTCTCTTCAGGGCCATTCTTTAGTGGATCTTTTGAAACAGCTCAGCCGAGGTTTTGCTAATGCATATGGATCTTTGATGAAAGCATTTGTGGAGCATAATAAGTTTGGTAATCTTCCATATGGATTCCGAACAAATACATGGCTTGTCCCTCCATTTGTGGCCGAGAGTCCTTCAAACTTTCCTGCCTTACCTACTGAGGACGAAAGCTGGGGTGGTAATGGCGGTGGTCAGGGGAGAAATGGTGAATACAATCTTAGACCATGGGCAACAGACTTGGCAATATTGGCTTCTCTTCCTTGCAAAACTGAAGAGGAGAGGGTGGTCAGAGACAGAAAAGCTTTTCTGCTTCACAATCAATTTGTTGATACCTCAATATTTACAGCTGTTTCAGCTATAAGGCATGTCATAGAGTCGAAGTCCAATGGAAATAACGAACTGCATCGTTCTCCGGATTCAATCCTGCATGAAGATCGTGTGGGGGACTTGTCTATAGTAGTCAAACGTGATATCGGAGACACAAACCATAAGGATGATAAGAAACTTTCTGGTGGTGAGTCCACAGTGTTTAAGGAGGATTCTCAGAAGAATTTACTCAAAGGATTGACTGCAGATGAAAGTGTAATTGTTCGTGATACTTCTTCCTTGGCTGTCGTTGTTGTACACTACTGTGGATACGTTGCAACAGTAAGTGTGGTGGGTAACATTAACACAACGAAGCCTGAATTTCAAGACATTGAAATCGATGATCAGCCAGATGGAGGGGCAAATGCTCTCAATGTCAATAGCTTGAGGCTACTGCTTCACAAGTTTCGAGCTGAGCCATCCAAAGGGAGATCATCAATACCAAATTTGGATGATTTAGACTCTTCTAGAAATCATGTTCGGAAGGTGGTTAAAGAAAGCTTAGAAAAGAAAAGTGAGGAGCTAGTTAATTCAGAAAGGTCTATTCGGTGGGAACTCGGTTCTTGTTGGGTACAACATCTGCAAAAGCAGGAAACTTCAACAGATAAAAGTTCTGGAAAAAAGGAAGATGGCAAGGAAGCTATACAAGCTGTCAAAGGTCTTGGAAAGCAATTTAAATTTTTGAAGAGGAGGGAAAAGAAACCAACCAGTTTAGATTGTACAGACCATAGAGAGCAAAATGACTCTGGACCTTGTGATATAACTATTAAAGCTGAATTAAACAATGATGACTTAAATATCTCTGCTGAATTGGAGAAACATCTTTCAGAAGAAGCATTTTTGCGACTGAAAGAATCTGGAACTGGTCTGCATCTAAAGACAGTTGATGAGCTCATCAACATGGCACACAAGTACTATGACGAAACTGCCTTGCCAAAGCTGGTTACAGACTTTGGATCACTTGAACTTTCTCCAGTTGATGGTCGTACACTAACTGATTTCATGCATCTAAGAGGATTAAAGATGCGCTCCCTTGGTGAAGTAGTTAAACTTGCAGAAAATCTTCCACACATACAATCTCTTTGTATTCATGAGATGGTTACTCGGGCTTTCAAGCATTTACTCAAAGCCGTAATTGCCTCAGTTGATAATGTAGCAGACTTATCTCCCGCTATTGCATCAACATTGAATTTCTTACTTGGAAGCTGTCAATTGGAAAATACTGACCAAAATTTGACGGAAGACAATCATCTCAGATTGCAGTGGCTACGGGTATATTTAATAAAAAAATTTGGATGGACATTAAATGATGAATTTCAACATTTGAGGAAGTTATCAATCCTGAGAGGGCTTTGTCATAAGGTTGGATTGGAATTGTTCCCAAGAGATTATGACATGGAGACCTCCCACCCATTTGGGAAATACGATATTATCAGCCTAGTTCCTGTTTGCAAGTACATAGGATGCTCCTCAGCAGATGGACGCAATTTACTGGAATCATCCAAAATGGCTCTTGATAAAGGAAAGCTTGAGGATGCAGTAAATTATGGAACAAAGGCATTAGCAAAGATGATGGCTGTTTGTGGTCCCTATCATCGAACTACTGCAAGTGCTTATAGTCTTCTAGCTGTGGTTCTCTACCACACAGGAGATTTTAATCAAGCAACCATATATCAACAAAAGGCCCTGGATATAAATGAGAGGGAGCTTGGGCTTGACCATCCTGACACAATGAAAAGCTATGGGGATCTCTCTGTCTTTTATTACCGTCTGCAACACATGGAGCTGGCTCTGAAGTATGTCAACCGTGCTCTCTTCCTTCTTCACTTCGCATGTGGACTATCTCATCCAAACACAGCAGCAACATATATAAATGTGGCTATGATGGAAGAGGGAATGGGAAATGTTCATGTGGCGCTCAGATATTTGCATGAAGCTCTGAAATGCAACAAAAGATTGTTGGGAGAAGATCATATCCAGACTGCTGCGAGCTTCCATGCCATTGCCATAGCTCTTTCATTGATGGAAGCATATTCCCTGAGTGTACAACATGAACAAACGACCCTTAAGATACTTCAAGAAAAGCTTGGACCTGAAGATCTTCGTACACAGGATGCTGCTGCATGGCTAGACTATTTTGAATCAAAAGCAATAGAACAACAAGAAGCAGCTAAAAATGGAACTCCAAAGCCTGATGCATCCATTGCAAGTAAAGGTCACCTTAGTGTATCGGATCTCCTGGATTTTATTAATCCTGAACAAGAGCCAAAAGGAAATGACTCTCAGAGGAAACTGCGTGCAAAGCAGATACACCCAATAACTGATAAAAACCATCAAGAACATGATGATTCAGTAGCTGACGAGAACATTCGCTTGGATGGATCAAAAGATGATAAAAGTATGGCAAAAGGCAACACTCAAGAAACAAAATTCATGCTTCATTCTGAAGAACTGAAAGAAAATGGAGAATTCACTAGATATGTGCCTGAGACAAGTGAAGTTGTTGAGGCAATATCCTCTGATGAAGGGTGGCAAGAAGCCAATTCTAAAGGGCGGTCCGGAAACACAGCCAACCACAAGTTTGCTCGGAGGAGACCTCTTCTTGCAAAGCTGAGAATTAATAGCTCCGAGAATCACACCGTCAGAGAAAGCAATTATAGGAATGACATTACGTCGCCACCACATAAAGGAACTCCAAAAGTTACTTCAGCCACACTATCTTCACCTGGACAATTAAAAGCCAGAAGCTCCACTTTAAAAGAGGAACCTGTTAATCATTCAACAAGAGCTTCAGTGTCCAAAACTTCCTCTACTCCAGCAGCTCTTAGTCCTTTGGCTTCAAAGTCTATATCTTACAAAGAAGTGGCTCTGGCACCACCAGGTACTGTTTTAAAGCCCCTGTTGGAGAAAGCTGAAGAGGACAATGTAAAGACTGAAAGCGAGAAGAGCAATGCAGCCGAAGAAAGTTGCCGAAGCTCTGTAGTCGAAGCAGTTTCTAAGCAAGAAGATAAAAAGGAGGGGACTTGTGAACATGACATTCAAAGAGAAAGTTCTGCTTCAGAACTTGAGGAGGGATCCCTCTCTTCTGATCAGGCAAAACCTGCAGAAACCAATGGTAGTAAGCTTTCAGCCGCGGCGGAACCATTCAACCCAGGAATGTTGTTTATGCCTCACCATTTAAATTCGGTTCCCATCACAAACATTTATGATACAAATGCAAGTAAAGGCATGCTCGCGGATCCTGTGCTTCCTCCTGTTGCTGCTAGGGTCCCCTATGGGCCAAGATCACCTCTATACTATAGAACCAACTACACTTTTCGCATAAAACATGGTTATTCAAAAAATCACACCCCCATCAGGGAAAGAACTGGATTTGGGGCTCCAAGAATCATGAATCCACATGCACCTGAGTTCGTTCCCAGAAAAGCCTTGCACACGGAGAACAATGATGCCAATTCCTTTGAAACAAGTATGGCAGAAAAAAACAATCTAGATGAAAAACTCAGCAAGGATTTGAAGAAAAGTTCCCCGAGAAAGCGTGTTTCTGGATCTGAGAAGTCAGAGCTAGCTAGGCAGATATTGCTTAGCTTACTTGTGAAATCAGTTCAGCAAAATATTGATTCTGCTGCCGAATCCAGAGTCAGCGAAGAAAGAAGCGAGAAAATGGGGAATTCTTCTGATGCAATAGCTAAAGACAGTGCTATTATAAGAATTCTATACACGAATGAAGACAAAAATAAGAAGAATCCCCAATCAAATGGAAGTGAAGAGCAAGAAAACATAGATGCAGCCAATAAAAACAATGGAGATGAAGGGTTTATAGTTGTCACTAAGAAAAGAAGGAGCAGGCAAAAGTTCACAAATGGAGTATCAGATTTGTGCAATCAGCAATCCATCTGTGCTTCAGTCCGTTGA 5076 0.4216 MAPRSGRGKSNKAKAEKKKKEEKASVPSLVDINVVTPYDSPVVLKGISTDKILDVRRLLAVNVETCHFTNYSLSHEVKGQRLNDRVEVVTLKPCILKMVEEDYVEEAQAIAHVRRLLDIVACTTRFVKPRRALSSPDFKAKKTSKAQNNHKGNPSPPTTPHEELRIGSPAPVPSVSDNLGMVAIHPTPKLSDFYEFFSFSHLSPPILHLKRCELKNGDDRRKEDYFQLQVKIGNGKLIEVVASEKGFYTVGRQSLQGHSLVDLLKQLSRGFANAYGSLMKAFVEHNKFGNLPYGFRTNTWLVPPFVAESPSNFPALPTEDESWGGNGGGQGRNGEYNLRPWATDLAILASLPCKTEEERVVRDRKAFLLHNQFVDTSIFTAVSAIRHVIESKSNGNNELHRSPDSILHEDRVGDLSIVVKRDIGDTNHKDDKKLSGGESTVFKEDSQKNLLKGLTADESVIVRDTSSLAVVVVHYCGYVATVSVVGNINTTKPEFQDIEIDDQPDGGANALNVNSLRLLLHKFRAEPSKGRSSIPNLDDLDSSRNHVRKVVKESLEKKSEELVNSERSIRWELGSCWVQHLQKQETSTDKSSGKKEDGKEAIQAVKGLGKQFKFLKRREKKPTSLDCTDHREQNDSGPCDITIKAELNNDDLNISAELEKHLSEEAFLRLKESGTGLHLKTVDELINMAHKYYDETALPKLVTDFGSLELSPVDGRTLTDFMHLRGLKMRSLGEVVKLAENLPHIQSLCIHEMVTRAFKHLLKAVIASVDNVADLSPAIASTLNFLLGSCQLENTDQNLTEDNHLRLQWLRVYLIKKFGWTLNDEFQHLRKLSILRGLCHKVGLELFPRDYDMETSHPFGKYDIISLVPVCKYIGCSSADGRNLLESSKMALDKGKLEDAVNYGTKALAKMMAVCGPYHRTTASAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLSVFYYRLQHMELALKYVNRALFLLHFACGLSHPNTAATYINVAMMEEGMGNVHVALRYLHEALKCNKRLLGEDHIQTAASFHAIAIALSLMEAYSLSVQHEQTTLKILQEKLGPEDLRTQDAAAWLDYFESKAIEQQEAAKNGTPKPDASIASKGHLSVSDLLDFINPEQEPKGNDSQRKLRAKQIHPITDKNHQEHDDSVADENIRLDGSKDDKSMAKGNTQETKFMLHSEELKENGEFTRYVPETSEVVEAISSDEGWQEANSKGRSGNTANHKFARRRPLLAKLRINSSENHTVRESNYRNDITSPPHKGTPKVTSATLSSPGQLKARSSTLKEEPVNHSTRASVSKTSSTPAALSPLASKSISYKEVALAPPGTVLKPLLEKAEEDNVKTESEKSNAAEESCRSSVVEAVSKQEDKKEGTCEHDIQRESSASELEEGSLSSDQAKPAETNGSKLSAAAEPFNPGMLFMPHHLNSVPITNIYDTNASKGMLADPVLPPVAARVPYGPRSPLYYRTNYTFRIKHGYSKNHTPIRERTGFGAPRIMNPHAPEFVPRKALHTENNDANSFETSMAEKNNLDEKLSKDLKKSSPRKRVSGSEKSELARQILLSLLVKSVQQNIDSAAESRVSEERSEKMGNSSDAIAKDSAIIRILYTNEDKNKKNPQSNGSEEQENIDAANKNNGDEGFIVVTKKRRSRQKFTNGVSDLCNQQSICASVR 1691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0516 1691 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 878 1128 - -
Lele37g0516 1691 MobiDBLite consensus disorder prediction 1628 1656 - -
Lele37g0516 1691 MobiDBLite consensus disorder prediction 1407 1425 - -
Lele37g0516 1691 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 10 1415 IPR027523 GO:0006996
Lele37g0516 1691 MobiDBLite consensus disorder prediction 1308 1328 - -
Lele37g0516 1691 ProSiteProfiles Clueless (Clu) domain profile. 319 592 IPR025697 -
Lele37g0516 1691 MobiDBLite consensus disorder prediction 1229 1243 - -
Lele37g0516 1691 MobiDBLite consensus disorder prediction 136 170 - -
Lele37g0516 1691 MobiDBLite consensus disorder prediction 1227 1328 - -
Lele37g0516 1691 MobiDBLite consensus disorder prediction 1544 1573 - -
Lele37g0516 1691 Pfam Tetratricopeptide repeat 1006 1080 - -
Lele37g0516 1691 Pfam Tetratricopeptide repeat 922 992 - -
Lele37g0516 1691 MobiDBLite consensus disorder prediction 1356 1432 - -
Lele37g0516 1691 MobiDBLite consensus disorder prediction 1356 1373 - -
Lele37g0516 1691 CDD CLU-central 712 853 IPR033646 -
Lele37g0516 1691 Pfam Mitochondrial function, CLU-N-term 49 120 IPR028275 -
Lele37g0516 1691 MobiDBLite consensus disorder prediction 1 23 - -
Lele37g0516 1691 MobiDBLite consensus disorder prediction 1260 1302 - -
Lele37g0516 1691 Gene3D Tetratricopeptide repeat domain 996 1126 IPR011990 GO:0005515
Lele37g0516 1691 SUPERFAMILY TPR-like 960 1084 IPR011990 GO:0005515
Lele37g0516 1691 Gene3D Tetratricopeptide repeat domain 883 995 IPR011990 GO:0005515
Lele37g0516 1691 Coils Coil 1355 1375 - -
Lele37g0516 1691 SUPERFAMILY TPR-like 889 992 IPR011990 GO:0005515
Lele37g0516 1691 SMART tpr_5 923 956 IPR019734 GO:0005515
Lele37g0516 1691 SMART tpr_5 1007 1040 IPR019734 GO:0005515
Lele37g0516 1691 SMART tpr_5 965 998 IPR019734 GO:0005515
Lele37g0516 1691 MobiDBLite consensus disorder prediction 1158 1192 - -
Lele37g0516 1691 MobiDBLite consensus disorder prediction 1547 1573 - -
Lele37g0516 1691 MobiDBLite consensus disorder prediction 1384 1406 - -
Lele37g0516 1691 Pfam Translation initiation factor eIF3 subunit 135 710 852 IPR033646 -
Lele37g0516 1691 ProSiteProfiles TPR repeat profile. 923 956 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0516 Lele-ChrLele37 4206211 4218084 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0516 37 4206211 4218084 Lele37g0516 37 4206211 4218084 ECH
Lele37g0516 37 4206211 4218084 Lele39g0911 39 18064810 18076368 hybridization
Lele37g0516 37 4206211 4218084 Lele40g0459 40 3763415 3775493 hybridization