Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0400 ATGGCTTCCATAACGGTTTCCCAAATTCCCATTATCGCCCTCACTGATGAAAACTTGAAGGCTTGTACAGAGACATGGTTTTCAGTTAGCCAAGTCGTGCGAAGTGCATTAGAGGGTAATGGTTGTGTTTTTGTAATGAATAATAAGGTCCCTATGGAGCTTTGCAATTCAGTGTTTGGTCTACTTAAAGAACTGGTCGATCTTCCACTGGAGACAAAAATGCAAAAGATTAGCGATAAGCCTAGCCAAGGTTACATTGGACGAAATCCAAAAGCCCCTTTATACGAAAGCATTGGAATCGATTTGAACGGCTCGTCGAACGAGGAAGCAATTCAAAAGTTCGCCAACATTATGTGGCCGACTGGATATGATCATTTCTGAAGCTGTGACTCTCTTCTTGAATCAACCAATTATACATTTCAGAGCTTCAAATACCGAGCACCGCAGAGGACAGAGAGTAATTTAGGATTGATTGCTCACACTGACAGTCCATACTTCACCATATTACATCAGAATAATGTGAAAGGTTTGCAAGTAAAACTGAAAACTGGTGAATGGGTTAATATTGATCCCTCACCCTGTAAGTTTCTATTCCTAGCAGGTGATGCATTAAAGGTTTGGAGTAATGACAGAATACCAGCTTGTGAACATAAAGTGATCATGAGGGAAGGGAAAGAGAGGTACTCCATGGGATTACTTTCAATTAACAATAAGAAGGTTCAAACACAAGAAAAGCTGGTTGATGAAGACCATCCGATACGATATAGAGTATTTGACCATTATGAATACCAAGCCTTGCGTTACAAGTTTCCATCACAGACGGAAATTTCAAATCTTATTCTACTTTGA 849 0.3981 MASITVSQIPIIALTDENLKACTETWFSVSQVVRSALEGNGCVFVMNNKVPMELCNSVFGLLKELVDLPLETKMQKISDKPSQGYIGRNPKAPLYESIGIDLNGSSNEEAIQKFANIMWPTGYDHFXSCDSLLESTNYTFQSFKYRAPQRTESNLGLIAHTDSPYFTILHQNNVKGLQVKLKTGEWVNIDPSPCKFLFLAGDALKVWSNDRIPACEHKVIMREGKERYSMGLLSINNKKVQTQEKLVDEDHPIRYRVFDHYEYQALRYKFPSQTEISNLILL 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0400 282 Gene3D - 125 273 IPR027443 -
Lele40g0400 282 Pfam 2OG-Fe(II) oxygenase superfamily 145 230 IPR044861 -
Lele40g0400 282 SUPERFAMILY Clavaminate synthase-like 4 269 - -
Lele40g0400 282 Pfam non-haem dioxygenase in morphine synthesis N-terminal 9 87 IPR026992 -
Lele40g0400 282 Gene3D - 7 124 IPR027443 -
Lele40g0400 282 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 9 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0400 Lele-ChrLele40 3260151 3261287 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0400 155 269 Glycosyltransferase AT5G59530 31.667 1.02e-11 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0400 40 3260151 3261287 Lele40g0400 40 3260151 3261287 ECH
Lele37g0453 37 3735936 3737959 Lele40g0400 40 3260151 3261287 hybridization
Lele38g0423 38 3425779 3426919 Lele40g0400 40 3260151 3261287 hybridization